New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1181465 =266 (1.270)33 (0.170) 20/162 10.9 12.5% intergenic (+32/+442) USA300HOU_RS05885/USA300TCH1516_01103 hypothetical protein/tRNA‑Arg
?USA300TCH1516_ALE 1181489 = 224 (1.190)intergenic (+56/+418) USA300HOU_RS05885/USA300TCH1516_01103 hypothetical protein/tRNA‑Arg
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 250 total aligned reads displayed.

AATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAGGAAT  >  USA300TCH1516_ALE/1181399‑1181579
                                                                                          |                                                                                          
aaTTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTa                                                                                            <  1:974377/91‑1 (MQ=255)
  tttGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAtt                                                                                          >  2:1021234/1‑91 (MQ=255)
  tttGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAtt                                                                                          >  1:2253867/1‑91 (MQ=255)
   ttGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAttt                                                                                         <  2:737287/91‑1 (MQ=255)
   ttGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAttt                                                                                         <  2:219286/91‑1 (MQ=255)
   ttGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAttt                                                                                         <  2:1951500/91‑1 (MQ=255)
    tGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAtttt                                                                                        >  1:2302103/1‑91 (MQ=255)
     gCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAttttt                                                                                       <  1:3575005/91‑1 (MQ=255)
      ccAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAtttttt                                                                                      >  2:901543/1‑91 (MQ=255)
      ccAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACATGGTTAtttttt                                                                                      >  2:3024561/1‑91 (MQ=255)
       cAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAttttttt                                                                                     <  2:2715316/91‑1 (MQ=255)
        aaTAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAtttttttt                                                                                    >  1:329660/1‑91 (MQ=255)
        aaTAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAtttttttt                                                                                    >  1:1530183/1‑91 (MQ=255)
         aTAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTAttttttttt                                                                                   >  2:2571758/1‑90 (MQ=255)
         aTAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTa                                                                                   >  2:3296761/1‑91 (MQ=255)
         aTAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTa                                                                                   <  1:305665/91‑1 (MQ=255)
         aTAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTa                                                                                   >  2:1597058/1‑91 (MQ=255)
          tAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAg                                                                                  <  2:233511/91‑1 (MQ=255)
            gTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGAt                                                                                >  1:747006/1‑91 (MQ=255)
            gTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGAt                                                                                <  1:508314/91‑1 (MQ=255)
               tatTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGta                                                                             >  1:117918/1‑91 (MQ=255)
                 tttAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGtata                                                                           >  2:600050/1‑91 (MQ=255)
                 tttAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGtata                                                                           <  2:519318/91‑1 (MQ=255)
                      cAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataatt                                                                      <  2:1101172/91‑1 (MQ=255)
                      cAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataatt                                                                      <  1:2799750/91‑1 (MQ=255)
                      cAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACAACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataatt                                                                      >  1:1634564/1‑91 (MQ=255)
                       aaTGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataatta                                                                     <  1:2206546/91‑1 (MQ=255)
                       aaTGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataatta                                                                     <  2:3416985/91‑1 (MQ=255)
                       aaTGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataatta                                                                     >  1:1712267/1‑91 (MQ=255)
                        aTGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTAtataattat                                                                    >  1:131636/1‑91 (MQ=255)
                            aaaTTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATataattataatt                                                                >  2:3307058/1‑91 (MQ=255)
                             aaTTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATAtaattataatta                                                               >  2:1721322/1‑91 (MQ=255)
                             aaTTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATAtaattataatta                                                               <  2:2930396/91‑1 (MQ=255)
                             aaTTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATAtaattataatta                                                               <  1:1108069/91‑1 (MQ=255)
                             aaTTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATAtaattataatta                                                               >  1:1626925/1‑91 (MQ=255)
                              aTTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATaattataattat                                                              <  1:1358853/91‑1 (MQ=255)
                               ttAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAattataattata                                                             >  1:776049/1‑91 (MQ=255)
                               ttAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAattataattata                                                             >  2:2825763/1‑91 (MQ=255)
                                tAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAg                                                            >  1:1879307/1‑91 (MQ=255)
                                tAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGCGGTTATTTTTTTTACATGTATATCATTATATTTATAg                                                            >  2:1518020/1‑91 (MQ=255)
                                 aagaagAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAgg                                                           >  2:4535/1‑91 (MQ=255)
                                     agaaTAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGAttt                                                       <  2:318360/91‑1 (MQ=255)
                                     agaaTAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGAttt                                                       >  2:1523610/1‑91 (MQ=255)
                                        ataatTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCgg                                                    <  1:2508953/91‑1 (MQ=255)
                                          aatTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGc                                                  <  2:2436705/91‑1 (MQ=255)
                                          aatTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGc                                                  >  1:2042192/1‑91 (MQ=255)
                                            ttAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATGATTATAATTATAGGATTTCGGGccc                                                >  1:3362677/1‑91 (MQ=255)
                                              agttagttATATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCt                                              <  1:3259467/91‑1 (MQ=255)
                                              aGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCt                                              <  2:2635226/91‑1 (MQ=255)
                                              aGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCt                                              <  2:3114032/91‑1 (MQ=255)
                                               gTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTg                                             >  1:2760699/1‑91 (MQ=255)
                                                      aaaTAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTc                                      >  1:2632486/1‑91 (MQ=255)
                                                       aataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTcc                                     <  1:1158099/91‑1 (MQ=255)
                                                        ataatTAAAAGACCGCGTCTGGATGGACTTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTGCTGGCCCCTGAAAAGTccc                                    <  2:3050627/91‑1 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTTGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    <  2:3224045/91‑1 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    <  1:2376585/91‑1 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    <  2:1027884/91‑1 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    >  2:77190/1‑91 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    <  1:2208530/91‑1 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    <  1:615472/91‑1 (MQ=255)
                                                        ataatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTccc                                    <  2:2070973/91‑1 (MQ=255)
                                                         taatTCAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCt                                   <  2:3347197/91‑1 (MQ=255)
                                                         taatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCt                                   >  1:3207067/1‑91 (MQ=255)
                                                          aatTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTATATGTATATAATTTTAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTa                                  >  2:3578290/1‑91 (MQ=255)
                                                           atTAAAAAACCACGTCTCGATGGACGTGGTTATTTTGTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTaa                                 <  2:2859124/91‑1 (MQ=255)
                                                            ttAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTaaa                                >  2:1128012/1‑91 (MQ=255)
                                                             tAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTaaaa                               >  2:2032569/1‑91 (MQ=255)
                                                             tAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTaaaa                               >  1:3324884/1‑91 (MQ=255)
                                                              aaaaaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAt                              >  1:3592072/1‑91 (MQ=255)
                                                               aaaaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAtt                             >  1:248121/1‑91 (MQ=255)
                                                               aaaaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAtt                             >  1:1463948/1‑91 (MQ=255)
                                                                aaaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAttt                            >  2:1406092/1‑91 (MQ=255)
                                                                aaaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAttt                            >  2:1970872/1‑91 (MQ=255)
                                                                aaaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAttt                            >  1:2349306/1‑91 (MQ=255)
                                                                 aaaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAAtttt                           <  2:2552972/91‑1 (MQ=255)
                                                                  aaCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTg                          <  1:3084888/91‑1 (MQ=255)
                                                                   aCCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGa                         >  2:3509368/1‑91 (MQ=255)
                                                                    ccACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGaa                        >  1:210344/1‑91 (MQ=255)
                                                                      aCGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATa                      <  1:467299/91‑1 (MQ=255)
                                                                       cGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAg                     <  2:1879307/91‑1 (MQ=255)
                                                                       cGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAg                     <  1:2899541/91‑1 (MQ=255)
                                                                        gTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGt                    >  1:1020897/1‑91 (MQ=255)
                                                                         tctcGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTa                   >  1:1639570/1‑91 (MQ=255)
                                                                          ctcGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTAt                  <  2:2837463/91‑1 (MQ=255)
                                                                           tcGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATc                 >  1:581158/1‑91 (MQ=255)
                                                                            cGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAATGTCCCTATAATTTTGAATAGTATCa                >  2:3482791/1‑91 (MQ=255)
                                                                            cGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTGTCa                >  1:2927879/1‑91 (MQ=255)
                                                                             tcgagACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCaa               >  1:2350227/5‑91 (MQ=255)
                                                                             tcgagACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCaa               >  2:2617609/5‑91 (MQ=255)
                                                                             gATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCaa               >  1:2570211/1‑91 (MQ=255)
                                                                               tGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCaaaa             >  2:1192609/1‑91 (MQ=255)
                                                                                   cGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCta         >  1:975619/1‑91 (MQ=255)
                                                                                   cGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCta         >  1:65888/1‑91 (MQ=255)
                                                                                      ggTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAg      >  2:2262102/1‑91 (MQ=255)
                                                                                       gTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAgg     >  2:184106/1‑91 (MQ=255)
                                                                                       gTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAgg     >  1:750431/1‑91 (MQ=255)
                                                                                       gTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAgg     <  1:2661024/91‑1 (MQ=255)
                                                                                       gTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAgg     <  1:2011267/91‑1 (MQ=255)
                                                                                        ttATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAGGa    >  2:2152223/1‑91 (MQ=255)
                                                                                          aTTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAGGaat  >  1:3431369/1‑91 (MQ=255)
                                                                                          |                                                                                          
AATTTGCCAATAGTATATTTAGCAATGAAAATTAAGAAGAATAATTAGTGAGTTAAATAATTAAAAAACCACGTCTCGATGGACGTGGTTATTTTTTTTAGATGTATATAATTATAATTATAGGATTTCGGGCCCCTGAAAAGTCCCTAAAATTTTGAATAGTATCAAAATCTATAGGAAT  >  USA300TCH1516_ALE/1181399‑1181579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.