New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1205323248 (1.180)353 (2.930)
+AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG		 25/104 5.1 71.3% intergenic (‑204/‑365) USA300HOU_RS15290/lspA hypothetical protein/Lipoprotein signal peptidase
?USA300TCH1516_ALE = 1443739 NA (NA)intergenic (‑312/+41) USA300TCH1516_01342/brnQ_3 hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 159 total aligned reads displayed.

TACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTA  >  USA300TCH1516_ALE/1443671‑1443829
                                                                     |                                                                                          
tACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCaa                                                                      <  2:1919559/91‑1 (MQ=31)
 aCGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAc                                                                     <  1:364314/91‑1 (MQ=32)
 aCGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAc                                                                     <  1:3388456/91‑1 (MQ=32)
  cGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAcc                                                                    >  2:1240962/1‑91 (MQ=33)
   ttcgTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACct                                                                   >  2:2672732/4‑91 (MQ=18)
   gAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACct                                                                   >  1:983448/1‑91 (MQ=33)
   gAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACct                                                                   >  1:985095/1‑91 (MQ=33)
   gAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACCGCTGTTTTTTTAGGGATTTATGTCCCAACct                                                                   >  2:1035010/1‑91 (MQ=18)
     aGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACctct                                                                 <  1:2949512/91‑1 (MQ=37)
      gTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtt                                                                >  1:3306921/1‑91 (MQ=38)
       tATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTTCTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                               <  1:3061089/91‑1 (MQ=255)
       tATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                               >  2:3483692/1‑91 (MQ=39)
       tATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                               >  2:3483573/1‑91 (MQ=39)
       tATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCttt                                                               >  2:2683488/1‑91 (MQ=39)
        aTTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCtttt                                                              <  2:1319716/91‑1 (MQ=39)
        aTTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAACTGAAACTTATCTTACTGCTGTCTTCTTAGGGATTTATGTCCCCACCTCtttt                                                              >  2:2961760/1‑91 (MQ=11)
         ttGTATAAATAGAGAACAGCAGTAAGCT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTta                                                             >  2:3008626/1‑91 (MQ=255)
          tGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTtat                                                            <  1:766949/91‑1 (MQ=39)
            tataAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTatat                                                          <  1:479324/91‑1 (MQ=39)
              taAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGACTTATGTCCCAACCTCTTTTAtatta                                                        >  2:1246926/1‑91 (MQ=255)
               aagtAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtattat                                                       <  2:36937/88‑1 (MQ=255)
               aaaTAGAGAACAGCAGTAAGAT‑ATTTTCTAATTTTAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtattat                                                       <  2:3519594/91‑1 (MQ=255)
               aaaTAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtattat                                                       <  2:4833/91‑1 (MQ=255)
               aaaTAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtattat                                                       <  1:1386585/91‑1 (MQ=255)
                aaTAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATattatt                                                      >  2:1022873/1‑91 (MQ=255)
                 aTAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTTTTTTATATTATTc                                                     >  1:3629818/1‑91 (MQ=255)
                   agagAACAGGAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGt                                                   <  1:1242464/91‑1 (MQ=255)
                    gagaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGTGATTTATGTCCCAACCTCTTTTATATTATTCGtt                                                  >  2:3412126/1‑91 (MQ=255)
                    gagaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt                                                  >  1:338084/1‑91 (MQ=255)
                    gagaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt                                                  >  2:3306880/1‑91 (MQ=255)
                    aaaaaCAGCAGTAAGATAATTTTCAAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGt                                                   <  1:3202983/88‑1 (MQ=17)
                     agaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTATGGTTTTATGTCCCAACCTCTTTTATATTATTCGttt                                                 >  2:3040673/1‑90 (MQ=255)
                     agaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTa                                                 >  2:2827042/1‑91 (MQ=255)
                      gaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTAt                                                <  1:506898/91‑1 (MQ=255)
                      gaACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTAt                                                >  1:2060939/1‑91 (MQ=255)
                       aaCAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAc                                                                     >  1:783435/1‑69 (MQ=33)
                       aaCAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAAc                                                                     <  2:783435/69‑1 (MQ=33)
                        aCAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTc                                              >  1:3543154/1‑91 (MQ=255)
                        aCAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTc                                              >  1:2262464/1‑91 (MQ=255)
                        aCAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTc                                              >  1:1612455/1‑91 (MQ=255)
                          agcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                            >  2:1279417/1‑91 (MQ=255)
                          agcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                            >  1:1215578/1‑91 (MQ=255)
                          agcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                            <  2:1612455/91‑1 (MQ=255)
                          agcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                            <  2:2403049/91‑1 (MQ=255)
                          agcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt                                            >  1:2125627/1‑91 (MQ=255)
                          agcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGACCCAACCTCTTTTATATTATTCGTTATTCCt                                            >  1:2905746/1‑91 (MQ=255)
                           gcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTg                                           <  1:2682252/91‑1 (MQ=255)
                           gcagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTg                                           <  1:758707/91‑1 (MQ=255)
                            cagTAAGATAATTTTCAATTAGAAAA‑TATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGt                                          >  1:590641/1‑91 (MQ=17)
                            cagTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGt                                          >  1:502953/1‑91 (MQ=255)
                            cagTAAGAT‑AATTTTCAATTAGAAAATATCTTACTGCTGTTTTTTTAGGGATTTATGTTCCAACCTCTTTTATATTATTCGTTATTCCTGt                                          >  1:590601/1‑91 (MQ=17)
                               tAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTACGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGa                                       <  1:2885617/91‑1 (MQ=255)
                                aaGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTgct                                      >  1:2050169/1‑89 (MQ=255)
                                aaGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGat                                      >  1:335423/1‑91 (MQ=255)
                                 aGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTATGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTgctt                                     >  2:1754926/1‑88 (MQ=255)
                                 aGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGata                                     <  2:1530390/91‑1 (MQ=255)
                                 aGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGata                                     >  2:2485144/1‑91 (MQ=255)
                                  gAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGatat                                    >  1:3495619/1‑91 (MQ=255)
                                  gAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGatat                                    <  1:1704205/91‑1 (MQ=255)
                                   at‑atTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                   <  1:3490435/91‑1 (MQ=255)
                                    t‑atTTTCTTATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTGTATATTATTCGTTATTCCTGTTGATAttt                                  <  2:3158732/91‑1 (MQ=255)
                                      atTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTa                                 >  1:2362590/1‑91 (MQ=255)
                                       ttttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTaa                                >  2:715475/1‑91 (MQ=255)
                                        tttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCTAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTact                               >  2:942871/1‑89 (MQ=255)
                                         ttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAtt                              <  2:2225302/91‑1 (MQ=255)
                                         ttCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAtt                              <  2:2743967/91‑1 (MQ=255)
                                          tCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTg                             >  2:1929467/1‑91 (MQ=255)
                                          tCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTg                             <  2:3223241/91‑1 (MQ=255)
                                           cTAATTGAAAATTATCTTACTGCTGTTTTTTTTTTTTTTTTTGTCCCAACCTCTTTTATATTATTCGTTTTTCCTGTTGATATTTAATTgg                            >  2:2540871/1‑91 (MQ=25)
                                           cTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAttag                            <  2:1048368/91‑3 (MQ=255)
                                           cTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTgg                            >  1:1235600/1‑91 (MQ=255)
                                             aaTTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGAt                          >  2:3290804/1‑91 (MQ=255)
                                             aaTTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGAt                          >  2:1756517/1‑91 (MQ=255)
                                              aTTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATc                         <  1:771047/91‑1 (MQ=255)
                                                 gAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTg                      >  1:2848241/1‑91 (MQ=255)
                                                  aaaaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTCTTCGTTATTCCTGTTGATATTTAATTGGATCTTGt                     >  2:305687/1‑91 (MQ=255)
                                                    aaTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGttt                   >  1:1254666/1‑91 (MQ=255)
                                                     aTTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCATTATTCCTGTTGATATTTAATTGGATCTTGtttt                  <  2:3572278/91‑1 (MQ=255)
                                                      ttATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTa                 >  2:58473/1‑91 (MQ=255)
                                                       tATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                   <  1:1360607/72‑1 (MQ=255)
                                                       tATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAtt                                   >  2:1360607/1‑72 (MQ=255)
                                                       tATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTAc                <  2:1704847/91‑1 (MQ=255)
                                                        aTCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACa               <  2:935149/91‑1 (MQ=255)
                                                        aTCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACa               >  2:1826021/1‑91 (MQ=255)
                                                         tCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACaa              <  1:964995/91‑1 (MQ=255)
                                                           ttACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTGGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAat            <  1:3147778/91‑1 (MQ=255)
                                                           ttACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTGATTCCTGTTGACATTTAATTGGATCGTGTTTTACAAat            <  2:2058315/91‑1 (MQ=255)
                                                           ttACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTGTTATATTATTCGTCATTCCTGTTGATATTTAATTGGATCTTTTCTTACAAat            <  2:31904/91‑1 (MQ=37)
                                                            tACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAata           <  1:2514738/91‑1 (MQ=255)
                                                             aCTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAatat          >  1:2589926/1‑91 (MQ=255)
                                                              ctgctgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATg         <  2:3160284/91‑1 (MQ=255)
                                                              ctgctgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATg         >  2:1373098/1‑91 (MQ=255)
                                                              ctgctgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATg         <  2:2910369/91‑1 (MQ=255)
                                                              ctgctgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATg         >  2:1374550/1‑91 (MQ=255)
                                                                    tttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTGCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACt   <  2:2799005/91‑1 (MQ=255)
                                                                    tttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACt   >  2:3574890/1‑91 (MQ=255)
                                                                    tttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACt   <  1:1421517/91‑1 (MQ=255)
                                                                     ttttttAGGGATTTATGTCCCAACCTCTTTTATATTTTTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTa  <  2:641287/91‑1 (MQ=255)
                                                                     ttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTa  <  2:1245986/91‑1 (MQ=255)
                                                                     ttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTa  >  2:143995/1‑91 (MQ=255)
                                                                     |                                                                                          
TACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAT‑ATTTTCTAATTGAAAATTATCTTACTGCTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTA  >  USA300TCH1516_ALE/1443671‑1443829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.