New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1708636 =	69 (0.770)	4 (0.050)	3/244	14.9	6.0%	intergenic (+81/+121)	USA300HOU_RS08530/entA_3	hypothetical protein/Enterotoxin type A
	?	USA300TCH1516_ALE	1708685 =	64 (0.790)					intergenic (+130/+72)	USA300HOU_RS08530/entA_3	hypothetical protein/Enterotoxin type A
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACAT  >  USA300TCH1516_ALE/1708548‑1708825                                                                                                                                          |                                                                                                                                             tACTATAGTAGTTTTATTTTGTAATTAAACACTGAATTATATTTGTTTCTTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAtt                                                                                                                                           <  1:489622/141‑1 (MQ=255)  aCTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTAttt                                                                                                                                          <  1:205338/141‑1 (MQ=255)   cTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTg                                                                                                                                         >  3:45928/1‑141 (MQ=255)   cTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTg                                                                                                                                         >  1:649950/1‑141 (MQ=255)       agtagtTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTaac                                                                                                                                     >  1:550240/1‑141 (MQ=255)                 ttttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGa                                                                                                                           >  3:101503/1‑141 (MQ=255)                  tttGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGAc                                                                                                                          <  4:201318/141‑1 (MQ=255)                       aaTTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTa                                                                                                                     <  1:588835/141‑1 (MQ=255)                        aTTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTAc                                                                                                                    <  2:133017/141‑1 (MQ=255)                            cacaGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTta                                                                                                                <  2:123899/141‑1 (MQ=255)                             acaGTTAATCATATTTGTTTCGTATCGAATTCCTTTGCGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTtat                                                                                                               >  4:32516/1‑141 (MQ=255)                                gTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATAtt                                                                                                            <  4:45458/141‑1 (MQ=255)                                 ttAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTTTTTTTATTTGTAACAACATAATGACAGGTACTTTATAttt                                                                                                           <  3:144347/141‑1 (MQ=255)                                      cATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTg                                                                                                      <  1:407346/141‑1 (MQ=255)                                           ttGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCaaa                                                                                                 <  3:118821/141‑1 (MQ=255)                                            tGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAg                                                                                                <  3:278511/141‑1 (MQ=255)                                              tttCGTATCGAATTCTTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTTTAACAACATAATAACAGATACTTTATATTTTAATGTCAAatat                                                                                              >  4:208441/1‑141 (MQ=255)                                                 cGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATACTTACTGCTGTTTTTATTTGTAACAACATAATGATAGGTACTTTATATTTCACTGTCAAAGattat                                                                                           >  3:135897/1‑141 (MQ=255)                                                  gTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGattatt                                                                                          <  1:408567/141‑1 (MQ=255)                                                   tATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGAttatta                                                                                         >  1:309925/1‑141 (MQ=255)                                                      cGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATg                                                                                      <  3:134055/141‑1 (MQ=255)                                                       gAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGa                                                                                     <  1:267421/141‑1 (MQ=255)                                                        aaTTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGAt                                                                                    <  2:307725/141‑1 (MQ=255)                                                         aTTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGAtt                                                                                   >  2:234285/1‑141 (MQ=255)                                                            ccTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAAc                                                                                <  2:591119/141‑1 (MQ=255)                                                            ccTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAAc                                                                                >  1:685649/1‑141 (MQ=255)                                                            ccTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAAc                                                                                >  1:357404/1‑141 (MQ=255)                                                              tttGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGTATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACtt                                                                              >  2:300626/1‑141 (MQ=255)                                                                tgtgCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaa                                                                            >  1:574760/1‑141 (MQ=255)                                                                    cATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACttaattaa                                                                        <  2:309925/141‑1 (MQ=255)                                                                     aTTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaa                                                                       <  1:204607/141‑1 (MQ=255)                                                                       tAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatt                                                                     <  4:101503/141‑1 (MQ=255)                                                                        aaaGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTaattaaatta                                                                    <  4:45928/141‑1 (MQ=255)                                                                              aaTTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGAttt                                                              >  4:128447/1‑141 (MQ=255)                                                                               aTTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTg                                                             <  2:415310/141‑1 (MQ=255)                                                                                 tCTAATATAAAACAGCAGGAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGTCAGGTACTTTATATTTCACTGTCAAAGATTAGTAATGATTAACTTAATTAAATTATTATTTGaa                                                           <  4:119140/141‑1 (MQ=255)                                                                                          aaaCAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGat                                                  >  1:72528/1‑141 (MQ=255)                                                                                           aaCAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGata                                                 <  2:649950/141‑1 (MQ=255)                                                                                              agcagTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCt                                              <  4:151337/141‑1 (MQ=255)                                                                                               gcagTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTa                                             >  1:254184/1‑141 (MQ=255)                                                                                               gcagTAAGACTTTTCTAAGTGCAAACATCCTAACTGCTGTGTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTa                                             >  2:205914/1‑141 (MQ=255)                                                                                                 agTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTaaa                                           >  1:59185/1‑141 (MQ=255)                                                                                                 agTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTaaa                                           >  3:161969/1‑141 (MQ=255)                                                                                                    aaGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGc                                        >  1:480585/1‑141 (MQ=255)                                                                                                    aaGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGc                                        <  3:192252/141‑1 (MQ=255)                                                                                                     aGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCa                                       >  1:698930/1‑141 (MQ=255)                                                                                                     aGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCa                                       >  3:204877/1‑141 (MQ=255)                                                                                                      gACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAAAAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCaa                                      <  2:323148/141‑1 (MQ=255)                                                                                                       aCTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATATAAATGCAAt                                     >  4:297129/1‑141 (MQ=255)                                                                                                        cTTTTCTAAGTGTTAGCATCATTCATGCTGTTTTTATTTGTAACAACATCATGACAGGTACATTATATTTCACTGACAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAAtt                                    <  2:558288/141‑1 (MQ=255)                                                                                                           ttCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGt                                 >  3:74475/1‑141 (MQ=255)                                                                                                               aaGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAAtt                                    <  2:119591/134‑1 (MQ=255)                                                                                                               aaGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAAtt                                    >  1:119591/1‑134 (MQ=255)                                                                                                                aGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTa                            >  2:301041/1‑141 (MQ=255)                                                                                                                  tgtTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTAtt                          >  2:625899/1‑141 (MQ=255)                                                                                                                     tAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGAt                       <  2:447460/141‑1 (MQ=255)                                                                                                                       gCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATaa                     >  4:187296/1‑140 (MQ=255)                                                                                                                       gCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAg                     >  1:308075/1‑141 (MQ=255)                                                                                                                        cATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGt                    >  4:232626/1‑141 (MQ=255)                                                                                                                         aTCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGtt                   <  2:401811/141‑1 (MQ=255)                                                                                                                         aTCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGtt                   >  2:219432/1‑141 (MQ=255)                                                                                                                          tCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGttt                  >  4:103318/1‑141 (MQ=255)                                                                                                                           ccTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGtttt                 >  3:264268/1‑141 (MQ=255)                                                                                                                           ccTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGtttt                 <  1:212063/141‑1 (MQ=255)                                                                                                                                 tgctgTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATc           <  1:654933/141‑1 (MQ=255)                                                                                                                                  gctgTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCa          <  2:137762/141‑1 (MQ=255)                                                                                                                                          tATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACAt  >  2:40609/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                             TACTATAGTAGTTTTATTTTGTAATTACACAGTTAATCATATTTGTTTCGTATCGAATTCCTTTGTGCATTAAAGATAATTCTAATAGAAAACAGCAGTAAGACTTTTCTAAGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACAT  >  USA300TCH1516_ALE/1708548‑1708825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.