New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2830190 =	66 (0.730)	3 (0.040)	3/250	15.1	4.5%	intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
	?	USA300TCH1516_ALE	2830247 =	67 (0.810)					intergenic (+75/+372)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCA  >  USA300TCH1516_ALE/2830114‑2830386                                                                                                                                      |                                                                                                                                            atatCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                                                                      >  4:59457/1‑141 (MQ=255) atatCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                                                                      >  1:616546/1‑141 (MQ=255) atatCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGt                                                                                                                                      >  2:436945/1‑141 (MQ=255)   atCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTta                                                                                                                                    <  4:148474/141‑1 (MQ=255)      tttAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATAc                                                                                                                                 >  2:99551/1‑141 (MQ=255)        tAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACat                                                                                                                               <  3:132544/141‑1 (MQ=255)             ttattaTTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATAtt                                                                                                                          <  2:597005/141‑1 (MQ=255)              tattatTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTc                                                                                                                         >  1:490214/1‑141 (MQ=255)              tattatTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTc                                                                                                                         <  2:81579/141‑1 (MQ=255)                ttattGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTa                                                                                                                       <  1:659806/141‑1 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                  >  2:522271/1‑141 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                  >  3:187943/1‑141 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                  <  1:404228/141‑1 (MQ=255)                     ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                  >  1:468979/1‑141 (MQ=255)                      gAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGca                                                                                                                 >  1:244316/1‑141 (MQ=255)                            aacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTa                                                                                                           >  3:48808/1‑141 (MQ=255)                            aacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTa                                                                                                           >  1:136704/1‑141 (MQ=255)                               cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                                        >  2:109317/1‑141 (MQ=255)                               cATATAAATTGAACATTAATGCTGATTAATTATTAAGCTATGTTAAAAACACGCGGTGGACGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATAAATTCTAATTGCGTATTTAAAc                                                                                                        >  2:138292/1‑141 (MQ=255)                                 tataAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACtt                                                                                                      <  2:28378/141‑1 (MQ=255)                                    aaaTTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGt                                                                                                   >  1:286973/1‑141 (MQ=255)                                     aaTTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTa                                                                                                  >  1:193325/1‑141 (MQ=255)                                           aCATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGcc                                                                                            <  4:23271/141‑1 (MQ=255)                                             aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                                                                          <  3:62317/141‑1 (MQ=255)                                             aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                                                                          <  1:159139/141‑1 (MQ=255)                                                aaTGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATgg                                                                                       >  1:575840/1‑141 (MQ=255)                                                    cTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGt                                                                                   <  1:569084/141‑1 (MQ=255)                                                       attaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTAACGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAACTGCAAATGGGAGTggg                                                                                >  3:13258/1‑141 (MQ=255)                                                           attattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAg                                                                            >  2:348164/1‑141 (MQ=255)                                                           attattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAg                                                                            >  2:613195/1‑141 (MQ=255)                                                              attaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGaaa                                                                         >  1:461972/1‑141 (MQ=255)                                                                 aaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGa                                                                      >  4:124693/1‑141 (MQ=255)                                                                   gCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGata                                                                    <  3:56578/141‑1 (MQ=255)                                                                    cTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGatat                                                                   >  3:236022/1‑141 (MQ=255)                                                                      aTGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATAttt                                                                 <  3:262721/141‑1 (MQ=255)                                                                         ttAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCg                                                              >  4:30911/1‑141 (MQ=255)                                                                         ttAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCg                                                              <  1:611910/141‑1 (MQ=255)                                                                              aaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCTCATTTAAACATCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaaa                                                         >  3:104271/1‑141 (MQ=255)                                                                               acacGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGGCAGAAATGATATTTTCGCAAAat                                                        >  4:59130/1‑141 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                     >  2:564538/1‑141 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                     >  2:408373/1‑141 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                     >  1:74671/1‑141 (MQ=255)                                                                                  cgcgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                     >  4:34999/1‑141 (MQ=255)                                                                                   gcgGTGGGCCAAATCAGTTTCAATTGACTGACTTCGTTTTACCGTGTGTTTAATATTGTTATACATATATTCTAATTTCACATTTAAACTTCGTAAATGCCAATGGAAGCGGGACAGAAGTTAGAGTTTCGCAAAatttat                                                    <  3:300601/141‑1 (MQ=255)                                                                                    cgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                   >  2:607629/1‑141 (MQ=255)                                                                                    cgGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                   >  4:143472/1‑141 (MQ=255)                                                                                     ggTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTATCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttattt                                                  <  3:258863/141‑1 (MQ=255)                                                                                       tGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                <  4:187943/141‑1 (MQ=255)                                                                                                  aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAccc                                     <  2:136704/141‑1 (MQ=255)                                                                                                   gTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGGTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAcccc                                    <  1:702851/141‑1 (MQ=255)                                                                                                    tttGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCa                                   >  3:162164/1‑141 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                       >  1:290003/1‑112 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatt                                                       <  2:290003/112‑1 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                >  1:249830/1‑119 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                >  1:249840/1‑119 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                <  2:249830/119‑1 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcg                                                <  2:249840/119‑1 (MQ=255)                                                                                                             actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGcaca                          >  3:299402/1‑141 (MQ=255)                                                                                                              ctgactTCGTTTTAACGCATGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGTGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACat                         <  2:557971/141‑1 (MQ=255)                                                                                                                 actTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACattat                      >  1:18103/1‑141 (MQ=255)                                                                                                                   ttCGTTTTACCGCATGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTg                    >  4:67566/1‑141 (MQ=255)                                                                                                                      gTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTaa                 >  3:291902/1‑141 (MQ=255)                                                                                                                       ttttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAc                <  1:164626/141‑1 (MQ=255)                                                                                                                         ttACCGTGTGTTTAATATTGTTATACATATATTCTAATTGCACATTGAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCt              <  2:410558/141‑1 (MQ=255)                                                                                                                          tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg             <  4:43432/141‑1 (MQ=255)                                                                                                                          tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg             <  1:190339/141‑1 (MQ=255)                                                                                                                          tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg             >  1:109721/1‑141 (MQ=255)                                                                                                                            ccGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTcc                                          >  4:174491/1‑110 (MQ=255)                                                                                                                            ccGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTcc                                          <  3:174491/110‑1 (MQ=255)                                                                                                                            ccGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCGCAACTTGCACATTATTGTAACCTGAc           >  2:558248/1‑141 (MQ=255)                                                                                                                                   tttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATCGTTACCGGACTTTCCGc    >  1:38083/1‑141 (MQ=255)                                                                                                                                    ttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCACTGGGCGAGAGACCGCCATGATCTTTTACCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGcc   <  3:59130/141‑1 (MQ=25)                                                                                                                                    ttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGcc   >  4:90553/1‑141 (MQ=255)                                                                                                                                     tAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCa  <  3:59457/141‑1 (MQ=255)                                                                                                                                      |                                                                                                                                            ATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCA  >  USA300TCH1516_ALE/2830114‑2830386

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.