| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2674542 | 69 (1.110) | 6 (0.100) | 3/238 | NT | 8.2% | intergenic (‑54/+247) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP |
| ? | USA300TCH1516_ALE | = 2674577 | 71 (1.240) | intergenic (‑89/+212) | glcB/ydaP | PTS system glucoside‑specific EIICBA component/Putative thiamine pyrophosphate‑containing protein YdaP | |||||
CGCTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2674396‑2674542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatgaGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAAT < USA300TCH1516_ALE/2674577‑2674439 CGCTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCA > 1:700861/1‑140 TAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCACTATCTCAATTTCCGCTTCCAAGTACAAAAAAAGCAGcc > 1:272413/1‑138 TAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACAAAAAAACATCACCTATCTCAATTTCAGATTCCATGTCCAAAAAAAGCAGGC > 1:13443/1‑140 TAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATG > 2:471530/1‑140 ggAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAACCATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGT < 1:128618/138‑1 GTAACAGTAATTCTTTACCGATAAGTTCCAATTTTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGT < 1:55333/140‑1 CTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCT < 1:145124/140‑1 ttcCCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 1:320741/137‑1 TTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTCTCCCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 1:331362/140‑1 TTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGC < 1:585494/140‑1 GGCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGC > 1:471530/1‑140 GCATGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCA > 2:327345/1‑140 gGAGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTA < 2:270216/139‑1 GAGCAAACAACCGCACTATGAGAATAGTATTGTTTGTTCATGCCTGCTTTTTTTGTACAGGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTga > 2:492505/1‑138 AGCAAACAACCGCACTAGGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAAT < 2:424036/140‑1 CGCTAATAAAATACCAGCTGCTGGTAAAATCGCAACAGGTAACATTAATGCTTTACCGATACGTTGCAATTGTCCAAACAATTTCTTAAACATATAAACATCCCCTATCTCAATTTCCGCTTCCATGTACAAAAAAAGCAGGCATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2674396‑2674542‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatgaGCAAACAACCGCACTATGAGAATAGTCTTGTTTGTTCATGCCTGCTTTTTTTGTACATGGAAGCGGAAATTGAGATAGGGGATGTTTATATGTTTAAGAAATTGTTTGGACAATTGCAACGTATCGGTAAAGCATTAAT < USA300TCH1516_ALE/2674577‑2674439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |