| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2001491 = | 11 (0.180) | 3 (0.050) | 3/244 | NT | 22.4% | intergenic (‑3219/+116) | USA300TCH1516_01882/USA300TCH1516_01883 | tRNA‑Val/tRNA‑Ala |
| ? | USA300TCH1516_ALE | 2179606 = | NA (NA) | intergenic (+3368/+1927) | ilvA/USA300TCH1516_02069 | L‑threonine dehydratase biosynthetic IlvA/tRNA‑Gly | |||||
CTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGAT > USA300TCH1516_ALE/2001352‑2001625 | gcgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagttaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaag > 2:573992‑M1/140‑140 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataattaagtaaattccccagtcgaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa > 1:166532‑M1/139‑140 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa < 2:573458‑M1/2‑1 (MQ=255) cgagcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa > 2:109607‑M1/139‑140 (MQ=255) agagagcttaactaaaaagaaattgtacatggaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgaattactaaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGa > 1:351255‑M1/139‑140 (MQ=255) gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 1:50184‑M1/5‑1 (MQ=255) gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAaca < 1:250259‑M1/5‑1 (MQ=255) gcgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgatcgaaaGAaca < 2:297186‑M1/5‑1 (MQ=255) cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac > 1:395715‑M1/135‑140 (MQ=255) cgcttgactaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaattcataagaaataatcgctagtgttcgaaaGAacac > 1:565406‑M1/135‑140 (MQ=255) cgctagactaaaaagaaatagtacatttataactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaattaagcttgaattcataagaaataatcgctagtgttcgaaaGAacac > 2:463333‑M1/135‑140 (MQ=255) actaaaaagaaattgtacattgaaaactagataagtaagtaaactatagcttttaccaagcaaagccgagtcaataaagaggtttaaataagattgaattgataagaaaaaatggctattgtgcgaaaGAAcactaacaa < 2:605817‑M1/12‑5 (MQ=255) actaaaaagaaattgtacattgaaaactagataagtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaaataagcttgaaatcataagaaataatcgctagtgttcgaaagaacacacccaa < 1:81814‑M1/12‑7 (MQ=255) tatgcACCGTGCGTCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGat < 1:300462/136‑1 (MQ=0) aaccTATGTTTCCATCATTTTTATATTTCAAACCTTAACTTGAAGTTACTTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTCTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTAttt < 1:264382/137‑1 (MQ=1) gtaagtaaaatatagattttaccaagcaaaaccgagtgaataaagagttttaataactctataattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAActc > 1:712630‑M1/95‑140 (MQ=255) aaatatagattttaacaagcaaaatcgagttaataaagagttttaaataagcttgtattcataagaaataatcgctagtgttctttcGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTc > 1:15305‑M1/88‑140 (MQ=255) cggtattaATCTTGTGAGTGTTCTTTCGAACACTAGCGA‑TATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAaat < 2:638670/137‑1 (MQ=0) cTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGga < 2:449613/140‑1 (MQ=11) atcgctagtgttcgaaaGAACACTAGCGATTATTACTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTACAATCTATATTTTAGTTACTTATCAAGTTTTCAATGTACAAATAATGGTGga < 2:435506‑M1/123‑1 (MQ=255) tgAGTGTTCTTTCGTTCACTAGCGATTATTTCTTATGTATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCATTGTACAAATAATGGTGGAGACt < 1:224750/140‑1 (MQ=255) tgAGTGTTCTTTCCAACATTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACt < 2:112267/140‑1 (MQ=18) gAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTa < 2:188742/140‑1 (MQ=34) aGTGTTCTTTCGAAAACTAGCGAATATTTCTTATGAATTAAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTATTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAAACTAg > 2:351532/1‑140 (MQ=11) tgtTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCg > 2:466902/1‑140 (MQ=37) ttCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTATGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAACTAATGGTGGAGACTAGCggg > 2:19814/1‑140 (MQ=255) atCTTTCGTACACTAGCGTTTATTTCTTATGAATTCAAGCTTATTTTAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCggg < 1:369201/139‑1 (MQ=255) cTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCTGGAt > 2:528599/1‑140 (MQ=38) | CTAGTGCCAAGGCATCCACCGTGCGCCCTTAATAACTTAATCTATGTTTCCACCATTTTTATAAGTCAAACGTTAACATGAAGTTACGTTCTTTTATAAAAAGATTTAAACGCGTTATTAATCTTGTGAGTGTTCTTTCGAACACTAGCGATTATTTCTTATGAATTCAAGCTTATTTAAAACTCTTTATTCACTCGGTTTTGCTTGGTAAAATCTATATTTTACTTACTTATCTAGTTTTCAATGTACAAATAATGGTGGAGACTAGCGGGAT > USA300TCH1516_ALE/2001352‑2001625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |