New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	34173 =	71 (1.140)	5 (0.080)	5/246	NT	7.1%	coding (462/480 nt)	rlmH	Ribosomal RNA large subunit methyltransferase H
	?	USA300TCH1516_ALE	= 57858	64 (1.080)					intergenic (+304/+613)	USA300HOU_RS00240/USA300TCH1516_00049	hypothetical protein/hypothetical protein

GCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATT  >  USA300TCH1516_ALE/34034‑34307                                                                                                                                            |                                                                                                                                       gCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAAGGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgagga                                                                                                                                        <  1:704122/140‑1 (MQ=255)  cGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCATTATCATTCAGCAAAATGACATTCCCACATCAAAGGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCgaggag                                                                                                                                       <  1:202239/140‑1 (MQ=255)   ggctCAAACGGCCTGCATAAGGACGTCTTACAACTCAGTAACTACTCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACTGAGCATTTAAGATTCTGCGAGgaga                                                                                                                                      <  2:372197/137‑1 (MQ=255)    gtattagtttaatcagaagacgtgtctactttgtaagcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGaa                                                                                                                                     <  2:108854‑M1/4‑1 (MQ=255)      tCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGc                                                                                                                                   <  1:610055/140‑1 (MQ=255)          aCGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCatat                                                                                                                               >  1:526544/1‑140 (MQ=255)                  cacaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAatg                                                                                                                       >  1:704919/1‑140 (MQ=255)                   acaAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAatga                                                                                                                      >  1:584752/1‑140 (MQ=255)                           gTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAAAAGCATATCATAAATGAAGAGGttt                                                                                                              >  2:644144/1‑140 (MQ=255)                            tCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGtttt                                                                                                             >  2:701850/1‑140 (MQ=255)                             cTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATAAAATGATGCGGGTTGTGTTAATTGAACAAGCGTACAGAGCATTTAAGATTATGCGAGGATAAGCATAAGATAAATAATACGGtattt                                                                                                            >  1:54376/1‑140 (MQ=255)                               tACAACGCAGTAACTACGCATTATCATTCAGCAATATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTc                                                                                                          <  1:147487/140‑1 (MQ=255)                                     taagcttttaagaacttattatatgatatagcgtttgagttttgttgttcttttataaatttctgtatttttttttaatataccgaatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGc                                                                                                    >  1:1514‑M1/104‑140 (MQ=255)                                      cAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCt                                                                                                   >  1:723047/1‑140 (MQ=255)                                        gcttctaagaacttattatatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTc                                                                                                 <  2:687028‑M1/40‑1 (MQ=255)                                          aaCTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCAGTTTTTTCAGCCGCTTCAt                                                                                               >  2:22787/1‑140 (MQ=255)                                               cGCACTATCATTCAGCAAAATGACATTCCCACATCAAAGTATTCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTTATaaatg                                                                                          <  2:149809/140‑3 (MQ=255)                                                gCACTTTCATTCAGACAAATGACATTCCCACTTCTAATGATGCGGGTTGTGTTAATTGTATAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                         <  1:19477/140‑1 (MQ=255)                                                gCACTAGCATTCAGCAAAAGGTCATTCCGACGTCAAAGGAGGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAggg                                                                                         <  2:624478/140‑1 (MQ=255)                                                  acctccATTCAGCAAAATTACACTCCCAAATCAAATGCTGCGGGTTGTGTTAATTGAGCAAGTGTACAGAGCATTTAAGATTATACGAGGACAAGCATATCATAAATGATGCGGTTTTTGCAGCCGCTTCATAAAGGGAt                                                                                       <  2:139480/135‑1 (MQ=255)                                                    tATCATTCAGCAAAATGACATTCCCACATCAAATGATTCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATGATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGAttt                                                                                     <  1:216369/140‑1 (MQ=255)                                                       cATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTTAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGa                                                                                  <  1:244958/140‑1 (MQ=255)                                                          tatgatatagcgtttgagttttgttgttcttctataaatttctgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATg                                                                               <  1:655393‑M1/58‑1 (MQ=255)                                                          tCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGAACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAACGGGATTTTGAATg                                                                               >  2:394412/1‑140 (MQ=255)                                                           cAGCAAAATGGCATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAAAAAGTGTACAGATCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGt                                                                              <  1:153424/140‑1 (MQ=255)                                                                 aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGGTTTTGAATGTATCAGa                                                                        >  1:193682/1‑140 (MQ=255)                                                                 aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGa                                                                        >  2:317942/1‑140 (MQ=255)                                                                 aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGa                                                                        >  1:119657/1‑140 (MQ=255)                                                                 aaTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAACCGCATCCTCAAGGGATTTTGAATGTATCAgc                                                                        >  2:388955/1‑139 (MQ=255)                                                                  aTGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTAATAAAGGGATTTTGAATGTATAAGaa                                                                       >  1:367322/1‑140 (MQ=255)                                                                       actCCCACATCAAATGATGCGGGTTGTGTGAATTGAAAAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                  <  2:17793/138‑1 (MQ=255)                                                                       aTTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGGTTCTCTTAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACatat                                                                  <  1:713858/140‑1 (MQ=39)                                                                         tCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                >  2:554095/1‑140 (MQ=255)                                                                         tCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGa                                                                <  1:616235/140‑1 (MQ=255)                                                                          cccACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAg                                                               >  1:631092/1‑140 (MQ=255)                                                                          cccACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAg                                                               >  1:723158/1‑140 (MQ=255)                                                                          cccAAATCGAAAGATGGGGGGTGTGTTAATTGAACTAGTGTACAGAGCATTTAAGATTATGCGAGGCGAAGCATATTATAAATGATGCGGTTTTTTCCGCCGCTTCATAAAGGGTTTTTGAATGTATCAGAACATATGAg                                                               <  2:1583/140‑1 (MQ=255)                                                                             acaTCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGtt                                                            <  2:413979/140‑1 (MQ=255)                                                                                 cAAATGATGCGGGTTGTGGTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGATAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtg                                                        <  1:23166/140‑1 (MQ=255)                                                                                  aacggattCGGGCTGGGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACACATGAGGTTTAtgt                                                       <  1:160912/136‑1 (MQ=38)                                                                                  aaaTGATGCGGGTTGTGTTAATTGAAAAAGTTTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgt                                                       <  1:718541/140‑1 (MQ=255)                                                                                   aaTGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGAGAGGAGAAGCATATCATAAAGGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTAtgtg                                                      >  2:325/1‑140 (MQ=255)                                                                                       atgCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGCTTATGTGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTTAATGTATCAGAACATATGAGGTTTATGTGAAtt                                                  >  1:319330/1‑140 (MQ=255)                                                                                          tgggTTTTGGTAATTGAACAAGTGTAAAGAGCATTTAAGTTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCt                                               <  1:298631/139‑1 (MQ=255)                                                                                          cGGGTTGGGTTAATTGAACAAGGGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCt                                               <  2:491180/140‑1 (MQ=255)                                                                                            ggTTGTGTTAATTGAACAAGTTTAAAGAGCATTTAAGTTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGTTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGt                                             <  1:154807/140‑1 (MQ=255)                                                                                             gTTGTGTTAATTGAGCAAGGGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGATTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATAAGAACATATGAGGTTTATGTGAATTGCTGtt                                            >  1:400546/1‑140 (MQ=255)                                                                                             gTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGATGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCATAACATATGAGGTTTATGTGAATAGCTGtt                                            >  1:234770/1‑140 (MQ=255)                                                                                             gTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGtt                                            >  1:225412/1‑140 (MQ=255)                                                                                               tgtgTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTAt                                          <  2:669774/140‑1 (MQ=255)                                                                                                gtgtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGCTTTTGAATGTATCAGAACATATGAGGTTAATGTGAATTGATGTTATg                                         >  1:475780/1‑140 (MQ=255)                                                                                                  gtTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtt                                       >  1:160218/1‑140 (MQ=255)                                                                                                   ttAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttt                                      <  1:337493/140‑1 (MQ=255)                                                                                                    tgtagttatttttcaaaaaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtttt                                     <  2:349213‑M1/100‑1 (MQ=255)                                                                                                    caaTTGAACAAGGGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGtttt                                     <  2:615020/139‑1 (MQ=255)                                                                                                     aaTTGAACAAGTGTACAGTGCATTTAAGTTTATGCGAGGTGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttttt                                    <  1:76938/140‑1 (MQ=255)                                                                                                     aaTTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGttttt                                    <  2:438071/140‑1 (MQ=255)                                                                                                      aTTGAACTAGTGTACTTAGCTTTTAAGATTATTCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTa                                   <  1:238768/140‑1 (MQ=37)                                                                                                         gAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaaga                                <  2:413698/140‑1 (MQ=255)                                                                                                         gAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTGCAGCCGCTTCATAAAGGGTTTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaaga                                <  2:40449/140‑1 (MQ=255)                                                                                                          aaCAAGTGTACAGATCATTGAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTaagaa                               <  2:655354/140‑1 (MQ=255)                                                                                                            cAAGTTTACAGAGCCTTTAAGATTATGCGAAGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGc                             <  2:469928/140‑1 (MQ=255)                                                                                                            cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGc                             <  2:723158/140‑1 (MQ=255)                                                                                                            cAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGc                             >  1:645309/1‑140 (MQ=255)                                                                                                              aGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCtt                           >  1:551384/1‑140 (MQ=255)                                                                                                               gtgtACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTa                          >  1:522702/1‑140 (MQ=255)                                                                                                               gtgtACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATAAGAACCTAAGAGGGTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTa                          >  1:677372/1‑140 (MQ=255)                                                                                                                     aaccgcatcattaactgataagcAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATaa                    <  1:591125‑M1/117‑1 (MQ=255)                                                                                                                      gagCATTTAAGATTATTCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAg                   <  2:572241/140‑1 (MQ=255)                                                                                                                        gCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTa                 <  2:235388/140‑1 (MQ=255)                                                                                                                        gCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTa                 <  1:545059/140‑1 (MQ=255)                                                                                                                        gCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTa                 >  1:679818/1‑140 (MQ=255)                                                                                                                           tttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATg              >  2:260687/1‑140 (MQ=255)                                                                                                                            ttAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCGTAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTATTGa             >  2:61020/1‑140 (MQ=255)                                                                                                                                 aTTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTc        <  1:684241/140‑1 (MQ=255)                                                                                                                                   tATGCGATGAGAATCATATCATTAATGATGCGGTTTTTTCAGCCTCTTTATAAAGTGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:43705/140‑1 (MQ=37)                                                                                                                                   tATGCGATGAGAAGTATATTATATATGATGCGGTTTTTTCTGCCGCTTCATAAAGGGATTTTGAATGTATCAGATCATATGAGGCTTACGTTAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:278451/140‑1 (MQ=37)                                                                                                                                   tATGCGAGGGGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGATTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGTATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:139897/140‑1 (MQ=255)                                                                                                                                   tATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCAt      <  1:701850/140‑1 (MQ=255)                                                                                                                                     tGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTNCTGTTCTGNTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGa    >  2:435282/1‑140 (MQ=255)                                                                                                                                       cGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATTAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGAtt  >  1:687591/1‑140 (MQ=255)                                                                                                                                       cGAGGAGAAGCATATAATAAATGATGCGGATTTTTCAGCCGCTTCATTAAGAGATAATGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATGAATAATGAGGATCCTGAtt  >  2:282234/1‑140 (MQ=37)                                                                                                                                            |                                                                                                                                       GCGGATCAAACGGCCTGCACAAGGACGTCTTACAACGCAGTAACTACGCACTATCATTCAGCAAAATGACATTCCCACATCAAATGATGCGGGTTGTGTTAATTGAACAAGTGTACAGAGCATTTAAGATTATGCGAGGAGAAGCATATCATAAATGATGCGGTTTTTTCAGCCGCTTCATAAAGGGATTTTGAATGTATCAGAACATATGAGGTTTATGTGAATTGCTGTTATGTTTTTAAGAAGCTTATCATAAGTAATGAGGTTCATGATT  >  USA300TCH1516_ALE/34034‑34307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.