Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 1,551,783 | A→G | 7.4% | S231P (TCA→CCA) | ebpS ← | Elastin‑binding protein EbpS |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 1,551,783 | 0 | A | G | 7.4% | 165.7 / 4.8 | 69 | S231P (TCA→CCA) | ebpS | Elastin‑binding protein EbpS |
Reads supporting (aligned to +/- strand): ref base A (27/36); new base G (3/2); total (30/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-01 |
CCAAACCTGCTGTTCCAGCACCGATCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATC > USA300TCH1516_ALE/1551648‑1551915 | ccAAACCTGCTGTTCCAGCACCGATCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGt < 2:500818/140‑1 (MQ=255) ctgctgTTCCAGCACCGATCGCTGCACCTTTTTGGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTa < 1:57980/140‑1 (MQ=255) ctgTTCCAGCACCGATCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCt > 1:511505/1‑140 (MQ=255) gTTCCAGCACCGATCGCTGCACCTTTTTTGCCATTATGAGGACCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCttt < 1:377249/140‑1 (MQ=255) cAGCACCGATCGCTGCACCTTTTTTTTTTTTTTTTTGATCTTTAGACTTATCTTGAGATGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGTATTACTTTTGTTTTGTGCGTCATTGGAATGTTTCTTAGTTTTATaa > 2:96837/1‑140 (MQ=255) aGCACCGATCGCTGCACGTTTTTTGCCATTATGATGCGCTTTAGACTTATCTTGAAACGCTTTATCCACAGTCGAGTTATTCGCCTTGCCAGAATTACGTTTGTTATGAGCGTCCTTTAAAAGATGGTCAGCTTTatcag > 2:180186/1‑136 (MQ=255) aCCGATCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAagcag < 2:675289/140‑1 (MQ=255) cGATCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGcc < 1:540454/140‑1 (MQ=255) agcGCTGCACCTTGCGTGGCATCATGATGATCTTTTGACTTATCTTGAGACCCTTTATCCTCAGTCGAATTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCAt < 2:37623/138‑1 (MQ=255) aTCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCAt > 1:660356/1‑140 (MQ=255) tCGCTGCACCTTTTTTGCCATCATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCTAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGTGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCAtt < 2:542353/140‑1 (MQ=255) cGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTg > 2:492471/1‑140 (MQ=255) cGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTg > 1:58652/1‑140 (MQ=255) cGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCCTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGACTGTTTCTTAGCTTTAGAAGAAGCCATTg > 2:648841/1‑140 (MQ=255) gCTTCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGTTTTATCCTCTGTCTAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGc < 1:238191/140‑1 (MQ=255) cACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCa > 1:467419/1‑140 (MQ=255) ccTTTTTTGCCATTATTATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGc < 2:73359/140‑1 (MQ=255) ccTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGc < 2:225835/140‑1 (MQ=255) ttttTCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCa < 2:95517/140‑1 (MQ=255) tttGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCAc < 2:210055/140‑1 (MQ=255) tGCCATTATGTTGATCTTTAGACTGATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGCTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCt < 2:520844/140‑1 (MQ=255) gCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTTAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCCCCAGCTGCACCTg > 1:119694/1‑140 (MQ=255) gCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTg > 2:456762/1‑140 (MQ=255) gCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTg < 2:223914/140‑1 (MQ=255) gatCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACctgct > 2:128379/1‑140 (MQ=255) tCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGt < 1:11094/140‑1 (MQ=255) cTTATCTTGAGCCGCGTTATCCTCAGTCGAGTTATTCGCCTTGCCCGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTAGACCAGATGCACCTGCAACACCTGCTGTTCCAGCAc > 1:224270/1‑140 (MQ=255) cTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGGATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATa > 2:536305/1‑140 (MQ=255) cTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTATGTTTTGAGCGTCATTTGGATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATa > 2:536322/1‑140 (MQ=255) tGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTAATTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGAGGCCATTGCACCGGCTGCACCTGCCACACCTGCTGTTCAAGCACCACTacc > 2:46748/1‑138 (MQ=255) gagaCGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAgct > 1:364153/1‑140 (MQ=255) gacttttttTCCTCATTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGTAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAgctgc < 1:668666/135‑1 (MQ=255) cGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAgctgctg < 2:514447/140‑1 (MQ=255) tttATCCTCAGTCGTGTTATTCGCCTTGCCAGAATTACTTTTTTTTTGATCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCtt < 2:176285/140‑1 (MQ=255) ttATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCttt < 1:456732/140‑1 (MQ=255) ccTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTa > 1:424776/1‑140 (MQ=255) tCAGTCGAGTTATTCGCCTTGCCAGAATTACCTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTAcc < 2:391326/140‑1 (MQ=255) gTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCAtt < 1:697174/140‑1 (MQ=255) gTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACAAtt > 1:128986/1‑140 (MQ=255) tCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTa < 2:58652/140‑1 (MQ=255) gAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTatg < 2:467419/140‑1 (MQ=255) ttATTCGCCTCGCCAGCACTACTTTTGATTAAAGAGTCGCTTAAATATATCTTAGCTTTAGAACCAGCGAGTGCACCGGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCCGCTGCTTTTTTACCATTatgatg < 2:604837/140‑1 (MQ=255) gCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCTATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCttt < 2:671885/140‑1 (MQ=255) ccTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCCGCTGCTTTTTTACCATTATGATGTTCTTTa > 2:372015/1‑140 (MQ=255) ttGCCAGAATTACTTTTGTTTTGAGCGTGATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCGCCAATAACTGCTGCTTTTTTACCATTATGCTGTTGTTTatg > 2:132970/1‑138 (MQ=255) cAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCa > 1:523619/1‑140 (MQ=255) aGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCat > 1:723825/1‑140 (MQ=255) aaTTACTTTTGTTTTGAGCGTCATTTGTATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatct < 1:96837/140‑1 (MQ=255) aTTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatctt > 1:299123/1‑140 (MQ=255) ttACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatcttg < 1:171703/140‑1 (MQ=255) ttACTGTTGTTTTGAGCTTTATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatcttg < 1:80051/140‑1 (MQ=255) tACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTGTTTAGGTTCatcttgc > 1:554966/1‑139 (MQ=255) tACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACATGATGTTACAGAACAAATAGAGGATACTTTTTTACAATTATGATGTTTTTTAGGTTCatcttga > 1:231882/1‑140 (MQ=255) cTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAATCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatcttgatc < 1:664363/140‑1 (MQ=255) cTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGTTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatcttgatc < 1:543291/140‑1 (MQ=255) cTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATCATGTTCTTTAGGTTCatcttgatc > 1:254234/1‑140 (MQ=255) ttgttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCGGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCatcttgatcttg > 1:485414/1‑140 (MQ=255) tgttttgAGCGTCGTTTGAATGTTTCTTAGCTGTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGt < 2:668396/140‑1 (MQ=255) tgttttgAGCGTCATTTGGATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGt < 1:536322/140‑1 (MQ=255) tgttttgAGCGTCATTTGGATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGt < 1:536305/140‑1 (MQ=255) gttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGtt > 2:580666/1‑140 (MQ=255) ttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGttt < 1:88562/140‑1 (MQ=255) ttttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGttt < 1:153704/140‑1 (MQ=255) tttgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCACTAGCTGCTGCTTTTTTACCATTATGATGTTCTTTTGGTTCATCTTGATCTTGtttt < 2:335726/140‑1 (MQ=255) tgAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACGATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTAc < 2:364153/140‑1 (MQ=255) gAGCGTCATTTGGATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACa > 2:727733/1‑140 (MQ=255) gCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCATCAGCTGCACCTGAAACATCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGa < 1:418755/140‑1 (MQ=255) cGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGaa < 1:587193/140‑1 (MQ=255) acATTTGAACGTTTCTTAGCTTTAGAAGCAGCCATTGCAAGAGATGCACCTGCAACACCTGATGTTCCAGAACCAATAACTGCTACCTTTTTCACATTATGATGTTCTTTCGGTTCATCTTGATCTCGTTTTACAGCAta > 2:268241/2‑139 (MQ=255) | CCAAACCTGCTGTTCCAGCACCGATCGCTGCACCTTTTTTGCCATTATGATGATCTTTAGACTTATCTTGAGACGCTTTATCCTCAGTCGAGTTATTCGCCTTGCCAGAATTACTTTTGTTTTGAGCGTCATTTGAATGTTTCTTAGCTTTAGAAGCAGCCATTGCACCAGCTGCACCTGCAACACCTGCTGTTCCAGCACCAATAGCTGCTGCTTTTTTACCATTATGATGTTCTTTAGGTTCATCTTGATCTTGTTTTACAGAATC > USA300TCH1516_ALE/1551648‑1551915 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |