BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	431138 =	122 (1.070)	10 (0.090)	8/258	15.2	8.2%	intergenic (+16/+65)	nfrA/tcyP	NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP
*	?	USA300TCH1516_ALE	431188 =	111 (1.050)	10 (0.090)	8/258	15.2	8.2%	intergenic (+66/+15)	nfrA/tcyP	NADPH‑dependent oxidoreductase/L‑cystine uptake protein TcyP
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 125 total aligned reads displayed.

ATGATCAACGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTA  >  USA300TCH1516_ALE/430998‑431278

aTGATCAACGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATaa                                                                                                                                              >  2:163010/1‑141 (MQ=255)

aTGATCAACGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTAAAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATaa                                                                                                                                              <  2:374783/141‑1 (MQ=255)

   aTCAACGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAAccc                                                                                                                                           <  3:11411/141‑1 (MQ=255)

     cAACGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAAATAAAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGc                                                                                                                                         <  2:272574/141‑1 (MQ=255)

      aaCGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGcc                                                                                                                                        >  1:702111/1‑141 (MQ=255)

       aCGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGccc                                                                                                                                       <  2:257681/141‑1 (MQ=255)

           aCAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCct                                                                                                                                   >  1:149357/1‑141 (MQ=255)

            cAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCctc                                                                                                                                  >  1:492764/1‑141 (MQ=255)

               aCGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAg                                                                                                                               >  1:773278/1‑141 (MQ=255)

                cGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGc                                                                                                                              <  1:307579/141‑1 (MQ=255)

                  ggAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTACTACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCtt                                                                                                                            >  1:444662/1‑141 (MQ=255)

                       cGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAAt                                                                                                                       >  1:103265/1‑141 (MQ=255)

                       cGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAAt                                                                                                                       <  2:358002/141‑1 (MQ=255)

                       cGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAAt                                                                                                                       >  4:18514/1‑141 (MQ=255)

                       cGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAAAAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGACCCCCTCTAGCTTAAAAt                                                                                                                       >  3:331686/1‑141 (MQ=255)

                        gCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATg                                                                                                                      <  2:53146/141‑1 (MQ=255)

                        gCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATg                                                                                                                      >  2:636581/1‑141 (MQ=255)

                        gCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATg                                                                                                                      >  3:149895/1‑141 (MQ=255)

                          aaaGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGAt                                                                                                                    <  2:103265/141‑1 (MQ=255)

                          aaaGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGAt                                                                                                                    <  1:705013/141‑1 (MQ=255)

                           aaGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATa                                                                                                                   >  1:857750/1‑141 (MQ=255)

                            aGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATaa                                                                                                                  >  3:22250/1‑141 (MQ=255)

                            aGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATaa                                                                                                                  >  2:607492/1‑141 (MQ=255)

                                  aTGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAg                                                                                                            >  2:476519/1‑141 (MQ=255)

                                   tGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGc                                                                                                           >  2:492702/1‑141 (MQ=255)

                                    ggTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCt                                                                                                          >  2:212155/1‑141 (MQ=255)

                                     gTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTa                                                                                                         <  4:224992/141‑1 (MQ=255)

                                       cGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTaga                                                                                                       <  2:421268/141‑1 (MQ=255)

                                            caAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAggggg                                                                                                  <  1:699404/141‑1 (MQ=255)

                                             aaaTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCACCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGc                                                                                                 >  4:34900/1‑141 (MQ=255)

                                              aaTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCg                                                                                                <  1:240435/141‑1 (MQ=255)

                                               aTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCgg                                                                                               <  1:275992/141‑1 (MQ=255)

                                               aTTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCgg                                                                                               >  4:169646/1‑141 (MQ=255)

                                               aTTGAGATGTGCCTAGGAAACAAAGCAAGATTAGATATGTTAGCACAATTGCAAAGATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAGCCCGCCCCCCTCTAGCTTAAGATGATAAGTATAGCTAGAGGGGGCgg                                                                                               <  4:259078/141‑1 (MQ=255)

                                                ttGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCggg                                                                                              <  2:155326/141‑1 (MQ=255)

                                                ttGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCggg                                                                                              <  3:95137/141‑1 (MQ=255)

                                                   agaTGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTAt                                                                                           <  1:682393/141‑1 (MQ=255)

                                                    gaTGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTAtt                                                                                          <  3:285063/141‑1 (MQ=255)

                                                      tGTTCCTAGGAAACAAAGCCAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTc                                                                                        <  2:389273/141‑1 (MQ=255)

                                                       gTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCt                                                                                       >  1:554332/1‑141 (MQ=255)

                                                       gTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCt                                                                                       <  3:253589/141‑1 (MQ=255)

                                                       gTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCt                                                                                       >  4:365738/1‑141 (MQ=255)

                                                              ggAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCGGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATg                                                                                <  1:415067/141‑1 (MQ=255)

                                                              ggAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATg                                                                                >  3:18296/1‑141 (MQ=255)

                                                              ggAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATg                                                                                <  3:110579/141‑1 (MQ=255)

                                                                 aaCAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAAt                                                                             <  2:786429/141‑1 (MQ=255)

                                                                  aCAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAAtt                                                                            >  1:533140/1‑141 (MQ=255)

                                                                   cAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTa                                                                           <  3:127191/141‑1 (MQ=255)

                                                                   cAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTa                                                                           >  1:129764/1‑141 (MQ=255)

                                                                   cAAAGCAAGATTAGATATGTTAAAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTa                                                                           <  1:784435/141‑1 (MQ=255)

                                                                    aaaGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAg                                                                          >  2:95205/1‑141 (MQ=255)

                                                                    aaaGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTATAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGCATTTCTTGCAATGAAttcg                                                                          <  4:85263/141‑3 (MQ=255)

                                                                      aGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAgtg                                                                        <  1:406660/141‑1 (MQ=255)

                                                                      aGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAgtg                                                                        >  1:768088/1‑141 (MQ=255)

                                                                       gCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAgtgt                                                                       <  2:544454/141‑1 (MQ=255)

                                                                        cAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATACGTATAGCTAGAGGGGGCGGGTAGTTCTTGCAATGAATTAGtgtg                                                                      >  1:771956/1‑141 (MQ=255)

                                                                        cAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGtgtg                                                                      >  3:18835/1‑141 (MQ=255)

                                                                        cAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGtgtg                                                                      <  1:607492/141‑1 (MQ=255)

                                                                            aTTACATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATATCCCGCCCCCCTCTTGCTTAAAATGATAAGTATAGCTAGAAGGGACTGGTATTTCTTGCAATTAATTAGTTTGAAGt                                                                  <  4:190472/141‑1 (MQ=255)

                                                                               aGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTaa                                                               <  1:253058/141‑1 (MQ=255)

                                                                                   atGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGATAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgca                                                           >  1:581371/1‑141 (MQ=255)

                                                                                         gAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTa                                                     <  1:235414/141‑1 (MQ=255)

                                                                                         gAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTa                                                     >  4:112879/1‑141 (MQ=255)

                                                                                         gAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTa                                                     <  1:65856/141‑1 (MQ=255)

                                                                                          aaCAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCATCATTAt                                                    <  1:243058/141‑1 (MQ=255)

                                                                                          aaCAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTAt                                                    >  3:127416/1‑141 (MQ=255)

                                                                                           aCAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATc                                                   <  2:604437/141‑1 (MQ=255)

                                                                                            cAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCa                                                  >  2:315964/1‑141 (MQ=255)

                                                                                            cAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCa                                                  <  2:638968/141‑1 (MQ=255)

                                                                                              aTTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCAtt                                                <  1:152514/141‑1 (MQ=255)

                                                                                                  cAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGaa                                            >  2:790164/1‑141 (MQ=255)

                                                                                                   aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAAt                                           >  4:28380/1‑141 (MQ=255)

                                                                                                   aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAAt                                           <  2:492763/141‑1 (MQ=255)

                                                                                                   aaaaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAAt                                           <  2:492764/141‑1 (MQ=255)

                                                                                                     aaaTCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCg                                         <  1:127253/141‑1 (MQ=255)

                                                                                                        tCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGaaa                                      >  2:120095/1‑141 (MQ=255)

                                                                                                           ggCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTa                                   >  2:113534/1‑141 (MQ=255)

                                                                                                           ggCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTa                                   >  3:97615/1‑141 (MQ=255)

                                                                                                               tAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCtt                               <  4:59574/141‑1 (MQ=255)

                                                                                                                  tACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTAt                            <  1:212155/141‑1 (MQ=255)

                                                                                                                    cAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATcc                          <  3:266836/141‑1 (MQ=255)

                                                                                                                        gATAGCAAGATACCAAAATAGCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGTGGGCGGGTAGGTTTTGCAATGGGTGAGTGGGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAAt                      >  3:89800/1‑141 (MQ=255)

                                                                                                                          tAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGt                    >  1:347070/1‑141 (MQ=255)

                                                                                                                            gCAAGATACCAAAATAACCGGTCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGCGGGGCCGGGTATTCGTTGCAATGAATTAGTGTGATGTTAATGCAGCATTATAATTTGAATAGAAAGTATCTTTCTCCCAAtatct                  >  4:295547/1‑137 (MQ=255)

                                                                                                                               aGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATTTTTATCCCAATGTTTAGt               <  4:196798/141‑1 (MQ=255)

                                                                                                                               aGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGt               <  2:702111/141‑1 (MQ=255)

                                                                                                                               aGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGt               <  1:184554/141‑1 (MQ=255)

                                                                                                                                gATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGtt              <  3:350263/141‑1 (MQ=255)

                                                                                                                                gATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGtt              <  3:350147/141‑1 (MQ=255)

                                                                                                                                  tACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTaa            >  1:333429/1‑141 (MQ=255)

                                                                                                                                     cAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACtt         >  1:107303/1‑141 (MQ=255)

                                                                                                                                      aaaaTAACCCGCCCCCCTCTAGCTTAAAGTGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTg        <  2:591519/141‑1 (MQ=255)

                                                                                                                                      aaaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATgcagc                                                         <  1:60243/92‑1 (MQ=255)

                                                                                                                                      aaaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTg        <  2:16304/141‑1 (MQ=255)

                                                                                                                                      aaaaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTg        >  3:363568/1‑141 (MQ=255)

                                                                                                                                       aaaTCACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTgg       <  2:31790/141‑1 (MQ=255)

                                                                                                                                        aaTAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGc      >  1:32711/1‑141 (MQ=255)

                                                                                                                                          tAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCgg    <  2:533140/141‑1 (MQ=255)

                                                                                                                                            aCCCGCCCCCCTCTATCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAATTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTa  <  1:717231/141‑1 (MQ=255)

                                                                                                                                            aCCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTa  >  3:162218/1‑141 (MQ=255)

ATGATCAACGTACAAACGGGAATCGCAAAGAAACATGGTCGCAGCAAATTGAGATGTTCCTAGGAAACAAAGCAAGATTAGATATGTTAGAACAATTGCAAAAATCAGGCTTAATACAGCGATAGCAAGATACCAAAATAACCCGCCCCCCTCTAGCTTAAAATGATAAGTATAGCTAGAGGGGGCGGGTATTTCTTGCAATGAATTAGTGTGAAGTTAATGCAGCATTATCATTTGAATCGAAAGTATCTTTATCCCAATGTTTAGTTAACTTGGCGGTA  >  USA300TCH1516_ALE/430998‑431278

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.