Predicted mutation
evidence seq id position mutation annotation gene description
RA USA300TCH1516_ALE 911,610 G→A intergenic (‑221/‑107) USA300HOU_RS04510 ← / → sufC hypothetical protein/Vegetative protein 296

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE911,6100GA99.1% 371.9 / ‑4.2 105intergenic (‑221/‑107)USA300HOU_RS04510/sufChypothetical protein/Vegetative protein 296
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (53/51);  total (54/51)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01

Only 100 of 108 total aligned reads displayed.

TTAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAGTAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCTA  >  USA300TCH1516_ALE/911475‑911746
                                                                                                                                       |                                                                                                                                        
tttaaTTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATaaataagt                                                                                                                                     <  4:317779/138‑1 (MQ=255)
ttAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATaaataagt                                                                                                                                     <  3:339471/141‑1 (MQ=255)
 tAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGtt                                                                                                                                    <  1:200024/141‑1 (MQ=255)
 tAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGtt                                                                                                                                    <  2:173026/141‑1 (MQ=255)
  aaaTTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTta                                                                                                                                   <  3:314508/141‑1 (MQ=255)
  aaaTTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTta                                                                                                                                   >  2:507959/1‑141 (MQ=255)
   aaTTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTtat                                                                                                                                  >  1:51468/1‑141 (MQ=255)
    aTTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTtata                                                                                                                                 >  1:142671/1‑141 (MQ=255)
    aTTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTtata                                                                                                                                 >  2:724724/1‑141 (MQ=255)
       cATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATACtt                                                                                                                              >  1:690339/1‑141 (MQ=255)
           aaaTCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACt                                                                                                                          <  1:14026/141‑1 (MQ=255)
            aaTCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                         <  2:658090/141‑1 (MQ=255)
            aaTCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTg                                                                                                                         >  2:523525/1‑141 (MQ=255)
              tCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGaa                                                                                                                       <  2:27966/141‑1 (MQ=255)
               ccATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAAc                                                                                                                      >  3:100836/1‑141 (MQ=255)
               ccATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAAc                                                                                                                      >  3:113681/1‑141 (MQ=255)
                 aTTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGc                                                                                                                    >  1:248040/1‑141 (MQ=255)
                  ttGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCa                                                                                                                   >  1:724452/1‑141 (MQ=255)
                    gagaAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCatt                                                                                                                 <  4:353560/141‑1 (MQ=255)
                      gaAATTATGTGCTCTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCattat                                                                                                               <  4:370206/141‑1 (MQ=255)
                      gaAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGACCGCattat                                                                                                               >  1:382155/1‑141 (MQ=255)
                          ttATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACa                                                                                                           >  4:198055/1‑141 (MQ=255)
                           tATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACaa                                                                                                          <  4:156601/141‑1 (MQ=255)
                            aTGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACaaa                                                                                                         >  2:43764/1‑141 (MQ=255)
                                     tattatCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTg                                                                                                <  1:570364/141‑1 (MQ=255)
                                      attatCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGa                                                                                               <  3:177402/141‑1 (MQ=255)
                                         atCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGaa                                                                                                                       >  1:198824/1‑114 (MQ=255)
                                         atCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGaa                                                                                                                       <  2:198824/114‑1 (MQ=255)
                                         atCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTa                                                                                            >  1:837642/1‑141 (MQ=255)
                                          tCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTAc                                                                                           <  1:439907/141‑1 (MQ=255)
                                             tttATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACaaa                                                                                        <  2:193100/141‑1 (MQ=255)
                                             tttATATTTTTAAAGAGAGCGGATTAGAGTTGGACGTTAGGGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACaaa                                                                                        >  4:200679/1‑141 (MQ=255)
                                               tataTTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACaaatt                                                                                      <  1:23995/141‑1 (MQ=255)
                                                     tttAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACaaattaaaatt                                                                                >  1:217383/1‑141 (MQ=255)
                                                         aaGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAAttatta                                                                            <  1:411311/141‑1 (MQ=255)
                                                            agagCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATaa                                                                         >  2:419309/1‑141 (MQ=255)
                                                            agagCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATaa                                                                         >  1:483895/1‑141 (MQ=255)
                                                              agCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAAc                                                                       >  2:461035/1‑141 (MQ=255)
                                                              agCGGATTAGAGTTGTACTTTAAAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACACATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAAc                                                                       <  4:193477/141‑1 (MQ=255)
                                                               gCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACt                                                                      >  1:125043/1‑141 (MQ=255)
                                                                   aTTAGAGTTGTACTTTAGAGATATCAAAGATAATAAAAAGGGTTTAAGATGTTGATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTTTATTTGAGTACAAATTAAAATTATTATAAACTAGtt                                                                  >  2:516144/1‑141 (MQ=255)
                                                                    ttAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAATGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTa                                                                 <  2:77110/141‑1 (MQ=255)
                                                                    ttAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTa                                                                 <  2:400316/141‑1 (MQ=255)
                                                                     tAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTaa                                                                <  4:327597/141‑1 (MQ=255)
                                                                      agagTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAg                                                               <  1:20465/141‑1 (MQ=255)
                                                                        agTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGaa                                                             >  3:50143/1‑141 (MQ=255)
                                                                           tGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAAc                                                          >  1:533643/1‑141 (MQ=255)
                                                                              aCTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAATTTAAGATTATTATAATCTAGTTAAGAAAACttt                                                       <  2:292832/141‑1 (MQ=255)
                                                                              aCTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACttt                                                       <  1:287924/141‑1 (MQ=255)
                                                                                tttAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTtat                                                     <  1:166531/141‑1 (MQ=255)
                                                                                 ttAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTtata                                                    >  1:371392/1‑141 (MQ=255)
                                                                                   agagTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATAtt                                                  <  2:370469/141‑1 (MQ=255)
                                                                                   aaagTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATAtt                                                  <  2:754235/139‑1 (MQ=255)
                                                                                       ttattaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTAc                                              <  1:374622/141‑1 (MQ=255)
                                                                                        tattaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACg                                             <  2:667412/141‑1 (MQ=255)
                                                                                        tattaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACg                                             >  2:775726/1‑141 (MQ=255)
                                                                                         attaAAGATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAAGTTTATATTTTACgg                                            >  4:303663/1‑141 (MQ=255)
                                                                                         attaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAGTAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACgg                                            >  3:45543/1‑141 (MQ=255)
                                                                                         attaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACgg                                            >  3:214792/1‑141 (MQ=255)
                                                                                         attaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACgg                                            >  1:82948/1‑141 (MQ=255)
                                                                                         attaAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACgg                                            <  3:350013/141‑1 (MQ=255)
                                                                                             aaaaTAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAggg                                        <  2:51468/141‑1 (MQ=255)
                                                                                              aaaTAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGa                                       >  3:289651/1‑141 (MQ=255)
                                                                                                ataataAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTAGAAAGTTTTTTCGACCCCAATTTAATATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAat                                     >  3:34311/1‑141 (MQ=255)
                                                                                                ataataAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAat                                     >  1:591555/1‑141 (MQ=255)
                                                                                                 taataaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAata                                    <  1:74911/141‑1 (MQ=255)
                                                                                                  aataaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAatat                                   <  2:599923/141‑1 (MQ=255)
                                                                                                  aataaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAatat                                   >  2:454847/1‑141 (MQ=255)
                                                                                                   ataaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAAtata                                  >  1:211502/1‑141 (MQ=255)
                                                                                                    taaAAAGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATaa                                 >  4:222811/1‑141 (MQ=255)
                                                                                                        aaGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAACATg                             >  2:635687/1‑141 (MQ=255)
                                                                                                        aaGGGTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATg                             <  4:138463/141‑1 (MQ=255)
                                                                                                          gggTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGc                           >  1:290858/1‑141 (MQ=255)
                                                                                                           ggTTTAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCa                          <  1:378657/141‑1 (MQ=255)
                                                                                                             tttAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATc                        <  3:200679/141‑1 (MQ=255)
                                                                                                             tttAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATc                        <  3:13695/141‑1 (MQ=255)
                                                                                                              ttAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCa                       <  1:43764/141‑1 (MQ=255)
                                                                                                              ttAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCa                       >  1:705451/1‑141 (MQ=255)
                                                                                                               tAAGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCaa                      <  2:270395/141‑1 (MQ=255)
                                                                                                               aaaattgttTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCaa                      <  2:382155/137‑1 (MQ=255)
                                                                                                                aaGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTTACTATTATTTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTAAGGAGGGAATATAAAATGTCATCAAc                     >  2:562147/1‑141 (MQ=255)
                                                                                                                aaGTTGTTTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAAc                     >  3:8689/1‑141 (MQ=255)
                                                                                                                  gttgttTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACAt                   >  3:206344/1‑141 (MQ=255)
                                                                                                                    tgttTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTa                 <  3:98902/141‑1 (MQ=255)
                                                                                                                    tgttTATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTa                 <  1:658017/141‑1 (MQ=255)
                                                                                                                      tttATATTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGa               >  4:332104/1‑141 (MQ=255)
                                                                                                                      ttcatacTAAGGTATAAATAAGTTAAAATTAACTGAACGCATTATTACAAAGTCTTTTTGAGTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTAATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGa               <  4:194666/138‑1 (MQ=255)
                                                                                                                        tataTTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGaaa             <  1:353592/141‑1 (MQ=255)
                                                                                                                         atatTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAAt            <  2:271917/141‑1 (MQ=255)
                                                                                                                         atatTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAAt            >  4:168607/1‑141 (MQ=255)
                                                                                                                          tatTAAGGTATAAATAATTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATc           <  1:830592/141‑1 (MQ=255)
                                                                                                                          tatTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATc           <  2:551767/141‑1 (MQ=255)
                                                                                                                           atTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCa          <  2:837642/141‑1 (MQ=255)
                                                                                                                           atTAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCa          >  3:339188/1‑141 (MQ=255)
                                                                                                                            ttAAGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCaa         >  1:379963/1‑141 (MQ=255)
                                                                                                                              aaGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAg       <  1:612882/141‑1 (MQ=255)
                                                                                                                              aaGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAg       >  4:345769/1‑141 (MQ=255)
                                                                                                                              aaGGTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAg       >  1:341562/1‑141 (MQ=255)
                                                                                                                                ggTATAAATAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGAc     >  2:537456/1‑141 (MQ=255)
                                                                                                                                   ataaataaGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCTa  >  1:572995/1‑141 (MQ=255)
                                                                                                                                       |                                                                                                                                        
TTAAATTCATAAAATCCATTGAGAAATTATGTGCACTTATTATCATTTATATTTTTAAAGAGAGCGGATTAGAGTTGTACTTTAGAGTTATTAAAAATAATAAAAAGGGTTTAAGTTGTTTATATTAAGGTATAAGTAAGTTATAATTAACTGAACGCATTATTACAAAGTCTTTTTGACTACAAATTAAAATTATTATAAACTAGTTAAGAAAACTTTATATTTTACGGAGGGAATATAAAATGGCATCAACATTAGAAATCAAAGACCTA  >  USA300TCH1516_ALE/911475‑911746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: