Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | USA300TCH1516_ALE | 454,656 | G→A | V119I (GTT→ATT) | tst_3 → | Toxic shock syndrome toxin‑1 |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 454,656 | 0 | G | A | 98.0% | 329.0 / ‑2.2 | 98 | V119I (GTT→ATT) | tst_3 | Toxic shock syndrome toxin‑1 |
Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (52/44); total (53/45) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 |
Only 100 of 108 total aligned reads displayed.
TTGCTTTTTAACCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTGTTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAGTGTC > USA300TCH1516_ALE/454518‑454792 | ttGCTTTTTAACCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATttagtatt > 1:109320/1‑141 (MQ=255) gCTTTTTAACCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATttagtattag < 1:812697/141‑1 (MQ=255) cTTTTTAACCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATttagtattagt < 1:200195/141‑1 (MQ=255) cTTTTTAACCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATttagtattagt < 3:84453/141‑1 (MQ=255) aaCCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTa < 3:367519/141‑1 (MQ=255) aCCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTaa < 1:777090/141‑1 (MQ=255) ccAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATTGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAAc > 1:825949/1‑141 (MQ=255) ccAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGATTAGATGTCTTTTCGGTAACAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAAc > 1:161573/1‑141 (MQ=255) caacaaAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACa < 1:126992/141‑1 (MQ=255) caacaaAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACa < 2:343436/141‑1 (MQ=255) caacaaAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAACACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACa > 2:398865/1‑141 (MQ=255) aacaaAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACaa < 1:308353/141‑1 (MQ=255) aacaaAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCATTGCGGTACCAGAATTAATAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACaa > 2:824807/1‑141 (MQ=255) acaaAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACaaa > 1:536636/1‑141 (MQ=255) ttttcttaaaaGTTAAAAGTGTTTTTATTGGGAACCGATGACAATAACTAAAAAGAAAAAACACATGGTTTAGATGTCTTTGTGGTACCAGAATTAGTAGATTTAGATGGAAGAATCTTTAGTATTAGTGGTGTATCAAAg > 2:728390/8‑141 (MQ=255) aTCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTATCAAAGaaaa < 1:761403/141‑1 (MQ=255) aTCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGaaaa < 2:339951/141‑1 (MQ=255) aTCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGaaaa < 1:619532/141‑1 (MQ=255) aTCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGaaaa < 3:71041/141‑1 (MQ=255) cAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAAc > 4:242655/1‑141 (MQ=255) aaaGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGt > 1:368162/1‑141 (MQ=255) aaaGTTCCAAGAGTTCGTATTGGGAAAATATGAAAATAAATACAAAGAAAAAACACATGGATTATATGTCTTTGCGGTACCAGAATTAGTAGATGTAGAAGGAAGAATACTTAGTATTATTGGTGTAACACAGAAAAACGt > 4:71112/1‑141 (MQ=255) aaGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTa > 1:176556/1‑141 (MQ=255) ttCCAAGTGTTTTTATAGGGAAAAGATGAAAATAAATACAAAGAATAAACACATGGGTTAGATGGCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAAAATTTAGTATTAGTAGTGTAACAAAGAAAAACGTaaaa > 1:117617/1‑141 (MQ=255) cgaaGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATc < 4:301304/139‑1 (MQ=255) ccAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATc > 3:317431/1‑141 (MQ=255) aaGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCaa < 1:112563/141‑1 (MQ=255) aaGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCaa > 2:431232/1‑141 (MQ=255) gtgtTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAata > 1:137238/1‑141 (MQ=255) gtTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATAtt < 3:116406/141‑1 (MQ=255) tttATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGa > 1:478464/1‑141 (MQ=255) tttATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCCTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTTGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGa < 1:625930/141‑1 (MQ=255) ttATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAg > 2:13452/1‑141 (MQ=255) tATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGt > 2:819358/1‑141 (MQ=255) ttGGGAAAAGAGGAAAATAAAAACAAAAAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGtct < 2:822511/141‑1 (MQ=255) tGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGtctc > 1:432061/1‑141 (MQ=255) tGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGtctc < 2:587404/141‑1 (MQ=255) tGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGtctc < 3:355576/141‑1 (MQ=255) gAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTGGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTaa < 3:71112/141‑1 (MQ=255) aaaaGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAg < 3:28201/141‑1 (MQ=255) aaGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGaa < 2:357401/141‑1 (MQ=255) aGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAAc > 1:223323/1‑141 (MQ=255) aaataaatACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTGTTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGaa > 2:518617/1‑141 (MQ=255) aataCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAACACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTAc > 1:126216/1‑141 (MQ=255) aataCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTAc > 4:207533/1‑141 (MQ=255) aataCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTAc > 2:530945/1‑141 (MQ=255) aataCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTAc < 1:13452/141‑1 (MQ=255) taCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTa > 1:781832/1‑141 (MQ=255) aCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAg < 2:814647/141‑1 (MQ=255) aCAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAg < 4:146799/141‑1 (MQ=255) aGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTGTTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTaa < 3:358995/141‑1 (MQ=255) aaaCACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAGCTTACTAGTTaaaaaaa > 3:273418/1‑141 (MQ=255) acacATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATa > 2:386590/1‑141 (MQ=255) acaTGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGa > 3:81314/1‑141 (MQ=255) acaTGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGa > 1:270251/1‑141 (MQ=255) tAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATGTTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAg > 1:387383/1‑141 (MQ=255) aGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGa > 3:368646/1‑141 (MQ=255) aTGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTGACTAGTTAAAAAAATAGACGATAAAGACg > 1:421834/1‑141 (MQ=255) tGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACgg < 1:398865/141‑1 (MQ=255) tGTCTTTCCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACgg < 3:334410/141‑1 (MQ=255) tCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATCTTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGtt > 1:774535/1‑141 (MQ=255) cTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGttt < 2:672640/141‑1 (MQ=255) cTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGttt < 1:124246/141‑1 (MQ=255) tttGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGtttt > 2:1216/1‑141 (MQ=255) cGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTGCTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTa > 1:682490/1‑141 (MQ=255) gTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTAtt < 4:317431/141‑1 (MQ=255) gTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTAtt > 2:266021/1‑141 (MQ=255) gTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAAGCAATATTGGAGGCGCTAAGAACGCCGAACGTAGTAGTTGAAAAAATAGACGATAAAGACGGTTTTTCTAtt > 1:517306/1‑141 (MQ=255) tACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATCCCGACGGTTTTTCTATtg > 1:697086/1‑141 (MQ=255) aCCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATtga > 2:680183/1‑141 (MQ=255) ccAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATtgat > 2:845043/1‑141 (MQ=255) cAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATtgatg < 4:289904/141‑1 (MQ=255) cAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATtgatg < 2:302944/141‑1 (MQ=255) cAGAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATtgatg < 2:554178/141‑1 (MQ=255) aaGAATTAGTAGATTTAAATGAAAGAATATTTAGTATTAGTGGTATAAAAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATtgatg < 2:417710/140‑1 (MQ=255) gAATTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGaa > 1:791190/1‑141 (MQ=255) aTTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTTTATTTATGAttt > 2:386917/1‑141 (MQ=255) aTTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAAtt > 4:238202/1‑141 (MQ=255) aTTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAAtt > 4:50667/1‑141 (MQ=255) aTTAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAAtt < 2:243646/141‑1 (MQ=255) ttAGTAGATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAAttt < 3:158067/141‑1 (MQ=255) tagATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCt < 2:796442/141‑1 (MQ=255) gATTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCttt < 1:156425/141‑1 (MQ=255) aTTTAGATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTa > 1:312892/1‑141 (MQ=255) ttAGATGGAAGAATATTTAGGATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACAAAATAAATAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTAtt < 4:129389/141‑1 (MQ=255) gATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCaa > 3:62422/1‑141 (MQ=255) gATGGAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCaa < 2:478464/141‑1 (MQ=255) tGGAAGAATATTTAGTAGTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCaaaa < 4:125906/141‑1 (MQ=255) ggAAGAATATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAg > 3:205453/1‑141 (MQ=255) gaaTATTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGgaag < 1:354694/141‑1 (MQ=255) tatTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGaagaag < 4:10509/141‑1 (MQ=255) atTTAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAgt > 3:175785/1‑141 (MQ=255) tttAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAgtg > 2:261628/1‑141 (MQ=255) tttAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAgtg > 1:708959/1‑141 (MQ=255) tttAGTATTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAgtg > 2:224504/1‑141 (MQ=255) ttagtattagtgGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAgtgt > 1:677823/1‑141 (MQ=255) tagtattagtgGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAgtgtt > 2:794702/1‑140 (MQ=255) tagtattagtgGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAGTGTc > 2:675117/1‑141 (MQ=255) tagtattagtgGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAGTGTc > 4:321677/1‑141 (MQ=255) tagtattagtgGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGGTTTTCTATTGAGGAATTTTTCTGTATTCAAAAGGAAGAAGTGTc > 2:561109/1‑141 (MQ=255) | TTGCTTTTTAACCAACAAAATCAAAAGTTCCAAGTGTTTTTATTGGGAAAAGATGAAAATAAATACAAAGAAAAAACACATGGTTTAGATGTCTTTGCGGTACCAGAATTAGTAGATTTAGATGGAAGAATATTTAGTGTTAGTGGTGTAACAAAGAAAAACGTAAAATCAATATTTGAGTCTCTAAGAACGCCGAACTTACTAGTTAAAAAAATAGACGATAAAGACGGTTTTTCTATTGATGAATTTTTCTTTATTCAAAAGGAAGAAGTGTC > USA300TCH1516_ALE/454518‑454792 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |