New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	48947 =	92 (1.020)	5 (0.060)	4/258	13.5	5.6%	intergenic (‑56/+178)	hin_2/USA300HOU_RS00205	DNA‑invertase hin/hypothetical protein
	?	USA300TCH1516_ALE	48972 =	82 (0.980)					intergenic (‑81/+153)	hin_2/USA300HOU_RS00205	DNA‑invertase hin/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTGCTTCGATAGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTA  >  USA300TCH1516_ALE/48809‑49087                                                                                                                                           |                                                                                                                                             aTTGCTTCGATAGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCATATGCCTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGcc                                                                                                                                            <  3:277895/141‑1 (MQ=255)    gCTTCGATAGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAAGTGATATATAAGCCCaa                                                                                                                                         <  2:461697/141‑1 (MQ=255)     cTTCGATAGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAAc                                                                                                                                        <  3:287038/141‑1 (MQ=255)      ttCGATAGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACa                                                                                                                                       >  2:658633/1‑141 (MQ=255)            aGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATg                                                                                                                                 <  3:289733/141‑1 (MQ=255)            aGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATg                                                                                                                                 <  2:221967/141‑1 (MQ=255)             gCTTGTTTCTGTGCTGCAAGAGATTGTTTTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATga                                                                                                                                <  1:319627/141‑1 (MQ=255)              cTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATgag                                                                                                                               >  2:208097/1‑141 (MQ=255)              cTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATgag                                                                                                                               >  1:445993/1‑141 (MQ=255)              cTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATgag                                                                                                                               >  2:632399/1‑141 (MQ=255)               ttGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATctcattga                                                                                                                              <  2:589265/141‑8 (MQ=255)               ttGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATgaga                                                                                                                              >  1:270049/1‑141 (MQ=255)                 gTTTTTGTGCTTCAAGCGAGTGTTGTTTCATCGTGCTGTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATGTATGGATGAATTGATATATAAGCCCAACATCAATGAGATg                                                                                                                            <  2:352986/141‑1 (MQ=255)                  tttCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGt                                                                                                                           >  1:410358/1‑141 (MQ=255)                   ttCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGtt                                                                                                                          >  2:139661/1‑141 (MQ=255)                   ttCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGtt                                                                                                                          >  1:379221/1‑141 (MQ=255)                    tCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTg                                                                                                                         <  1:285680/141‑1 (MQ=255)                       gtgCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGc                                                                                                                      >  2:58793/1‑141 (MQ=255)                        ggctgcAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCg                                                                                                                     <  3:198046/140‑1 (MQ=255)                          ctgcAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTc                                                                                                                   >  1:583530/1‑141 (MQ=255)                              aaGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCata                                                                                                               >  2:97927/1‑141 (MQ=255)                               agagATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCatat                                                                                                              <  2:135811/141‑1 (MQ=255)                               agagATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCatat                                                                                                              <  4:387/141‑1 (MQ=255)                               agagATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATAGTTATGGGTGAATGGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCatat                                                                                                              >  1:306765/1‑141 (MQ=255)                                gagaTTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATAtt                                                                                                             >  2:491980/1‑141 (MQ=255)                                gagaTTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATAtt                                                                                                             >  2:150969/1‑141 (MQ=255)                                gagaTTGTTGTTTCATCGTACTTTGACGTAAATAGCATATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATAGATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATAtt                                                                                                             >  2:390948/1‑141 (MQ=255)                                      gttgttTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAt                                                                                                       >  1:497087/1‑141 (MQ=255)                                      gttgttTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAt                                                                                                       >  1:157583/1‑141 (MQ=255)                                       ttgttTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAtt                                                                                                      <  2:28023/141‑1 (MQ=255)                                       ttgttTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAtt                                                                                                      <  1:295900/141‑1 (MQ=255)                                         gttTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAtttg                                                                                                    >  3:169906/1‑141 (MQ=255)                                            tCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAtttgttt                                                                                                 >  3:163255/1‑141 (MQ=255)                                             cATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCGCCTCCGTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCAtttgtttg                                                                                                <  1:99124/141‑1 (MQ=255)                                              aTCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttga                                                                                               >  1:418544/1‑141 (MQ=255)                                               tCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttgat                                                                                              <  2:527721/141‑1 (MQ=255)                                               tCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttgat                                                                                              <  2:128203/141‑1 (MQ=255)                                                cGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttgatt                                                                                             >  1:152784/1‑141 (MQ=255)                                                cGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttgatt                                                                                             >  1:325971/1‑141 (MQ=255)                                                cGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttgatt                                                                                             <  1:387078/141‑1 (MQ=255)                                                 gTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTttgattg                                                                                            <  2:38783/141‑1 (MQ=255)                                                   aCTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTtgattgat                                                                                          >  4:78984/1‑141 (MQ=255)                                                   aCTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTtgattgat                                                                                          >  3:178457/1‑141 (MQ=255)                                                   aCTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTtgattgat                                                                                          >  1:493431/1‑141 (MQ=255)                                                      ttGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATttc                                                                                       <  1:557389/141‑1 (MQ=255)                                                        gACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATttctt                                                                                     >  3:76411/1‑141 (MQ=255)                                                        gACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATttctt                                                                                     >  2:82451/1‑141 (MQ=255)                                                         aCGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATttcttc                                                                                    >  2:172273/1‑141 (MQ=255)                                                              aaTAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTa                                                                               >  2:131156/1‑141 (MQ=255)                                                              aaTAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTa                                                                               <  4:124330/141‑1 (MQ=255)                                                                 aGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCa                                                                            <  1:589488/141‑1 (MQ=255)                                                                   ccTATGACTTGTTTCATATTTACGCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCaaa                                                                          <  1:519466/141‑1 (MQ=255)                                                                   ccTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCaaa                                                                          <  2:467473/141‑1 (MQ=255)                                                                   ccTATCACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGCGCCTCCATCTTAGTCATTTGTTTGATTGATTTCTTCACTTACCaaa                                                                          <  4:37498/141‑1 (MQ=255)                                                                    cTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGAGGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAAt                                                                         >  1:187274/1‑141 (MQ=255)                                                                      aTGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCg                                                                       <  1:632399/141‑1 (MQ=255)                                                                        gACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGc                                                                     <  3:142622/141‑1 (MQ=255)                                                                          tttGTTTCATATCGTCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTGCTTCACTTACCAAATCGGCTa                                                                   <  2:641570/140‑1 (MQ=255)                                                                          cTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTa                                                                   >  4:163223/1‑141 (MQ=255)                                                                              tttCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAatat                                                               >  3:201094/1‑141 (MQ=255)                                                                              tttCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAatat                                                               >  1:353945/1‑141 (MQ=255)                                                                                    ttCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGAt                                                         <  4:17180/140‑1 (MQ=255)                                                                                    atCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGAt                                                         <  2:135098/141‑1 (MQ=255)                                                                                    atCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGAt                                                         >  4:188284/1‑141 (MQ=255)                                                                                      cGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATaa                                                       >  1:431258/1‑141 (MQ=255)                                                                                       tgCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAg                                                      <  2:395783/140‑1 (MQ=255)                                                                                           cctcctTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCa                                                  >  1:227343/1‑141 (MQ=255)                                                                                            ctcctTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCAt                                                 <  1:276437/141‑1 (MQ=255)                                                                                              cctTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATcc                                               >  4:249088/1‑141 (MQ=255)                                                                                              cctTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATcc                                               <  2:583094/141‑1 (MQ=255)                                                                                               ctTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTTGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCa                                              >  1:619455/1‑141 (MQ=255)                                                                                                tttCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCAt                                             >  2:162368/1‑141 (MQ=255)                                                                                                 ttCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATg                                            >  3:43350/1‑141 (MQ=255)                                                                                                  tCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGt                                           >  1:650238/1‑141 (MQ=255)                                                                                                   cacaGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGtt                                          <  4:256235/141‑1 (MQ=255)                                                                                                    acaGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGttt                                         >  2:88406/1‑141 (MQ=255)                                                                                                      aGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGttttt                                       >  1:649544/1‑141 (MQ=255)                                                                                                        tGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCa                                     <  1:425152/141‑1 (MQ=255)                                                                                                         gATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCAc                                    >  1:66529/1‑141 (MQ=255)                                                                                                           taataTATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTc                                  <  1:139661/141‑1 (MQ=255)                                                                                                                 atatTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGTTTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTAt                            >  2:165695/1‑141 (MQ=255)                                                                                                                  tatTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTAtt                           <  2:255750/141‑1 (MQ=255)                                                                                                                   atTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTAttt                          >  1:363694/1‑141 (MQ=255)                                                                                                                   atTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTAttt                          >  2:536989/1‑141 (MQ=255)                                                                                                                    tttATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTg                         <  3:103561/141‑1 (MQ=255)                                                                                                                    tttATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTg                         >  1:595534/1‑141 (MQ=255)                                                                                                                     ttATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGt                        <  2:607664/141‑1 (MQ=255)                                                                                                                       aTGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTc                      >  3:35202/1‑141 (MQ=255)                                                                                                                          gATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTAt                   <  3:44506/141‑1 (MQ=255)                                                                                                                                    tatataAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACg         <  2:152784/141‑1 (MQ=255)                                                                                                                                     atataAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGt        >  1:67607/1‑141 (MQ=255)                                                                                                                                         aaGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGat    <  2:303731/141‑1 (MQ=255)                                                                                                                                           gCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGatta  <  2:482611/141‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             ATTGCTTCGATAGCTTGTTTCTGTGCTGCAAGAGATTGTTGTTTCATCGTACTTTGACGTAAATAGCCTATGACTTGTTTCATATCGGCTCCTCCTTTCACAGTGATAATATATATTTATGGATGAATTGATATATAAGCCCAACATCAATGAGATGTTGGGCGTCCATATTAGTCATTTGTTTGATTGATTTCTTCAATTACCAAATCGGCTAATATCTCGATAAGTTCATCCATGTTTTTCACTCCGTTATTTGTTCTATCTTCAATACGTCGATTA  >  USA300TCH1516_ALE/48809‑49087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.