New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 802141	98 (1.090)	6 (0.070)	6/256	12.0	6.3%	intergenic (+382/+242)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase
	?	USA300TCH1516_ALE	= 802168	88 (1.060)					intergenic (+409/+215)	USA300HOU_RS03915/USA300HOU_RS03920	Putative 5'(3')‑deoxyribonucleotidase/Putative lipid kinase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAA  >  USA300TCH1516_ALE/802003‑802277                                                                                                                                           |                                                                                                                                         aTGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAAt                                                                                                                                        <  2:378366/141‑1 (MQ=255)  tGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAAtg                                                                                                                                       >  1:201408/1‑141 (MQ=255)     aTTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATgtgt                                                                                                                                    >  3:217574/1‑141 (MQ=255)        cATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTaa                                                                                                                                 <  1:509184/141‑1 (MQ=255)          tatTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATc                                                                                                                               >  3:264278/1‑141 (MQ=255)            tttttAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTa                                                                                                                             >  2:123168/1‑141 (MQ=255)            tttttAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTa                                                                                                                             >  4:229554/1‑141 (MQ=255)               ttAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATgg                                                                                                                          >  1:669039/1‑141 (MQ=255)                tAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGc                                                                                                                         >  2:88826/1‑141 (MQ=255)                  aGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAg                                                                                                                       >  1:162926/1‑141 (MQ=255)                  aGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAg                                                                                                                       >  4:147237/1‑141 (MQ=255)                  aGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAg                                                                                                                       >  2:616324/1‑141 (MQ=255)                  aGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAATCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAg                                                                                                                       >  1:347528/1‑141 (MQ=255)                   gTACACATTAGCTGTGACTAATGATAAAGAATCNCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGCTGAATGTGTTAATCTATNGCAGa                                                                                                                      >  1:71837/1‑141 (MQ=255)                   gTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGa                                                                                                                      >  1:583649/1‑141 (MQ=255)                    tACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGAt                                                                                                                     >  1:28271/1‑141 (MQ=255)                     acacATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGAtt                                                                                                                    <  1:88826/141‑1 (MQ=255)                      cacaTTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTa                                                                                                                   <  3:127066/141‑1 (MQ=255)                       acaTTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTac                                                                                                                  <  3:189745/141‑1 (MQ=255)                             gCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCa                                                                                                            <  1:8110/141‑1 (MQ=255)                             gCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCa                                                                                                            >  1:477188/1‑141 (MQ=255)                              cTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCAt                                                                                                           <  3:282318/141‑1 (MQ=255)                               tgtgACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATc                                                                                                          <  2:600589/141‑1 (MQ=255)                                gtgACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATcc                                                                                                         >  1:207630/1‑141 (MQ=255)                                gtgACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATcc                                                                                                         >  2:513912/1‑141 (MQ=255)                                 tgACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCg                                                                                                        <  1:206847/141‑1 (MQ=255)                                   aCTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAt                                                                                                      >  2:381862/1‑141 (MQ=255)                                   aCTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAt                                                                                                      >  2:416996/1‑141 (MQ=255)                                   aCTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAt                                                                                                      >  1:530694/1‑141 (MQ=255)                                     tAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttt                                                                                                    >  1:23908/1‑141 (MQ=255)                                      aaTGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAtttt                                                                                                   >  4:258347/1‑141 (MQ=255)                                       aTGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt                                                                                                  <  2:581753/141‑1 (MQ=255)                                       aTGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt                                                                                                  <  3:46855/141‑1 (MQ=255)                                       aTGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGAttttt                                                                                                  >  3:216490/1‑141 (MQ=255)                                           tAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTtata                                                                                              >  2:626292/1‑141 (MQ=255)                                            aaaGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAg                                                                                             >  2:604214/1‑141 (MQ=255)                                            aaaGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAg                                                                                             >  1:617358/1‑141 (MQ=255)                                              aGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGaa                                                                                           >  2:539477/1‑141 (MQ=255)                                                 aTCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAttt                                                                                        >  3:147282/1‑141 (MQ=255)                                                 aTCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAAttt                                                                                        <  2:201408/141‑1 (MQ=255)                                                  tCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTg                                                                                       <  1:552872/141‑1 (MQ=255)                                                   cGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGa                                                                                      <  4:239160/141‑1 (MQ=255)                                                   cGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGa                                                                                      <  2:255285/141‑1 (MQ=255)                                                    gCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaa                                                                                     >  2:656829/1‑141 (MQ=255)                                                    gCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaa                                                                                     >  1:358074/1‑141 (MQ=255)                                                      tACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGaaaa                                                                                   >  2:602607/1‑141 (MQ=255)                                                               aatcaTTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATa                                                                          >  1:514539/1‑141 (MQ=255)                                                                  caTTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAAc                                                                       >  2:177543/1‑141 (MQ=255)                                                                    ttAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCa                                                                     >  2:578372/1‑141 (MQ=255)                                                                    ttAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCa                                                                     >  4:260015/1‑141 (MQ=255)                                                                     tAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCAc                                                                    <  3:71737/141‑1 (MQ=255)                                                                     tAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCAc                                                                    <  4:264278/141‑1 (MQ=255)                                                                       gTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTa                                                                  <  1:172293/141‑1 (MQ=255)                                                                       gTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTa                                                                  <  1:158183/141‑1 (MQ=255)                                                                          gTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGa                                                               >  1:11382/1‑141 (MQ=255)                                                                           ttCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGAAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAt                                                              >  3:181785/1‑141 (MQ=255)                                                                             cTTTATCATTTCCTTCCCGCTCTCTATAAATGTTAGTTTATCTTATTATTATAAATCGGATTATTGTGTTAATCTATGGCAGATTACACGTCATCTGTTTTTTTATAGAATTTGAAAAAGACGCATTAACCACTATGAttt                                                            <  2:586457/141‑1 (MQ=255)                                                                                 aTCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTaaaa                                                        >  1:523226/1‑141 (MQ=255)                                                                                    aTTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATac                                                     >  4:243483/1‑141 (MQ=255)                                                                                        ccGTCCCGCTCTCAATAAATGTTCGTTTATATTATTATTATAAATCGGATGAATGTGTTAATCTATGACAGATTGCACGTCATCCGAATTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaaca                                                 <  2:304818/141‑1 (MQ=255)                                                                                        ccGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaaca                                                 >  2:543848/1‑141 (MQ=255)                                                                                        ccGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATacaaca                                                 >  2:274473/1‑141 (MQ=255)                                                                                            cccGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaa                                             >  4:193620/1‑141 (MQ=255)                                                                                              cGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc                                           <  3:127911/141‑1 (MQ=255)                                                                                              cGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatc                                           <  2:123092/141‑1 (MQ=255)                                                                                               gCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACatcaatca                                          <  1:513912/141‑1 (MQ=255)                                                                                                  ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt                                                             <  4:27273/119‑1 (MQ=255)                                                                                                  ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGAtt                                                             >  3:27273/1‑119 (MQ=255)                                                                                                  ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt                                       >  3:101285/1‑141 (MQ=255)                                                                                                  ctcAATAAATGTTAGTTTATCTTATTATTATAAATCGCATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCAttt                                       >  1:491459/1‑141 (MQ=255)                                                                                                     aaTAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAg                                    >  2:133782/1‑141 (MQ=255)                                                                                                      aTAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGt                                   <  4:217574/141‑1 (MQ=255)                                                                                                       tAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTg                                  >  4:55021/1‑141 (MQ=255)                                                                                                           tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCAt                              <  1:246641/141‑1 (MQ=255)                                                                                                           tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCAt                              >  1:165960/1‑141 (MQ=255)                                                                                                           tGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCCATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCAt                              <  1:128272/141‑1 (MQ=255)                                                                                                              tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATTGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg                           >  4:31595/1‑141 (MQ=255)                                                                                                              tAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcg                           >  2:28678/1‑141 (MQ=255)                                                                                                               aGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATgcgc                          >  4:56956/1‑141 (MQ=255)                                                                                                                gTTTATCTTATTATTTTAACTCGTATGAATGTGTTTTTCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAATGACGCATAAGCCGCTATGATTTAAAATACAACATCAATTATTTTAGTGGCATGCGcc                         <  1:124130/141‑1 (MQ=255)                                                                                                                gTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGcc                         <  2:615535/141‑1 (MQ=255)                                                                                                                   tATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTCTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCaaa                      <  2:531001/141‑1 (MQ=255)                                                                                                                     tCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAAt                    >  4:149464/1‑141 (MQ=255)                                                                                                                       ttattattaTAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATta                  <  1:60927/141‑1 (MQ=255)                                                                                                                         attcttatAAATCGGAGGAATGTGTTAATCTATGGCAGATTACACGTCATCAGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATATAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATtata                <  4:287305/141‑1 (MQ=255)                                                                                                                         attattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATtata                <  1:369407/141‑1 (MQ=255)                                                                                                                         attattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATtata                <  1:416996/141‑1 (MQ=255)                                                                                                                          ttattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTatat               >  3:209132/1‑141 (MQ=255)                                                                                                                          ttattatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTatat               >  2:33824/1‑141 (MQ=255)                                                                                                                            attatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGt             <  2:179225/141‑1 (MQ=255)                                                                                                                            attatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGt             <  2:617358/141‑1 (MQ=255)                                                                                                                            attatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGt             <  1:286889/141‑1 (MQ=255)                                                                                                                             ttatAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTc            >  2:158047/1‑141 (MQ=255)                                                                                                                               ataAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTg          >  3:218817/1‑141 (MQ=255)                                                                                                                                taAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGt         >  4:134805/1‑141 (MQ=255)                                                                                                                                    tCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGttttt     <  1:626292/141‑1 (MQ=255)                                                                                                                                    tCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGttttt     >  2:502225/1‑141 (MQ=255)                                                                                                                                       gATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGaa  >  2:191061/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                         ATGCATTCATATTTTTAAGTACACATTAGCTGTGACTAATGATAAAGAATCGCTACATAATCAATCATTAGTCGTTCTTTATCATTTCCGTCCCGCTCTCAATAAATGTTAGTTTATCTTATTATTATAAATCGGATGAATGTGTTAATCTATGGCAGATTACACGTCATCCGATTTTTTATAGAATTTGAAAAAGACGCATAAACCACTATGATTTAAAATACAACATCAATCATTTTAGTGGCATGCGCCAAAATTATATGTCTGTTTTTGAA  >  USA300TCH1516_ALE/802003‑802277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.