| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2504852 = | 174 (1.380) | 65 (0.640) | 28/222 | 6.3 | 31.2% | intergenic (+156/+248) | USA300HOU_RS12890/gltT | hypothetical protein/Proton/sodium‑glutamate symport protein |
| ? | USA300TCH1516_ALE | = 2505034 | 147 (1.440) | intergenic (+338/+66) | USA300HOU_RS12890/gltT | hypothetical protein/Proton/sodium‑glutamate symport protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Only 100 of 183 total aligned reads displayed.
GGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2505018‑2504852‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgttaggggcttttatgcatgcgcTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACC < USA300TCH1516_ALE/2505034‑2504896 GGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAG < 1:101780/141‑1 ggacCGTAGTGACCGTAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGG < 4:332038/137‑1 AGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAAGCGAACCGGAGCGCAGTGACCTCAGGTT > 2:702166/1‑141 GCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGGAGCGCAGTGACCTCAGGTTG > 3:316752/1‑141 CGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGGCCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGT > 1:579256/1‑141 CGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGT > 4:112410/1‑141 CGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGT > 2:509450/1‑141 CGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGCAGTAACATCTGATTGT > 4:222389/1‑141 CGTAGTGACCTCAGGGTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGCAGTGACCACAGGTTGg > 2:327129/1‑140 TAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTA < 2:613089/141‑1 AGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAG > 1:83544/1‑141 AGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAG < 1:811092/141‑1 GTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGG < 1:704587/141‑1 GTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGG < 1:627726/141‑1 TGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGCAGTGACCTCAGGTTGTTAGGG > 1:552791/1‑141 TGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGG > 1:508515/1‑141 cctttGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCT > 4:376218/6‑141 CTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTT > 1:344707/1‑141 TCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGAACTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGGGGAGTGACCTCAGGTTGTTAGGGGCTTT > 2:500140/1‑141 CAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGGAGCGTAGTGACCTCAGGTTGTTAGGGACTTTT > 1:455543/1‑141 GGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTAT < 4:189643/141‑1 TTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGC < 4:260823/141‑1 TTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTACGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTActcttt > 2:428351/1‑135 TAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGGAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGC > 1:660066/1‑141 GGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGC < 3:78332/141‑1 GACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGGAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTA > 2:915024/1‑141 GACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTA > 4:175007/1‑141 TTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAGGCG > 2:813179/1‑141 TTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCCTGCGCTttgcgc < 3:376218/141‑7 CGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAACCGCNGGCGAAC > 2:728044/1‑141 acgGAAGCGTAGTGACCGCAGGGTGTTAGGGACTTTTATGCATGCGATAATGCGCAGGCGATCCGGCGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTC < 4:116937/138‑1 GAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGG < 1:811953/141‑1 CGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGC < 3:162000/101‑1 CGTAGTGACCTCAGGTTGTTAGGGACTGTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGT < 1:927963/141‑1 GTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCCTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGG < 3:129384/141‑1 TGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCA > 3:404771/1‑141 TAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGC > 1:258300/1‑141 TAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGC > 3:137793/1‑141 AGGGGCTTGCAATCATGCACTAAAGCGCGGCGGAACAGGAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCG < 2:538920/141‑1 AGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCG < 3:4999/141‑1 GGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGC < 2:82641/141‑1 GGGACTTCTATTTATGAGCTAATGCGCAGGAGAACAGGAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGC < 2:457862/141‑1 ggaCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCT < 1:598298/138‑1 gacaTTTATGCAAGAGCTAATGTGCAGGCGTACAGAAGCGTAGCGACCTTAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTA < 2:85230/137‑1 TTATGCATGCGATAATGTGCAGGCTTACAGGACCGTAGTGACCTTTGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCG < 2:76763/141‑1 ATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCA < 1:70000/141‑1 ATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCG < 2:571249/141‑1 CGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGT < 2:659816/88‑1 CTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCG < 1:909694/141‑1 CTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGAAGGCGAACCG > 1:863816/1‑141 GGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACCTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGGAGTG > 3:332618/1‑141 AGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTT > 3:216834/1‑141 AGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCCCAGGTT > 3:394468/1‑141 cgtAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCCCAGGCGCACCGAAGCGTAGTTCCCTCTGGTTGT > 2:190576/4‑141 AGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAG < 1:572549/141‑1 AGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTAAG > 1:77557/1‑141 GTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGG < 1:674786/141‑1 GACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGG < 1:218724/141‑1 ccaaAGGTTGTAAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGACCCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCT > 3:405031/5‑141 ccaaAGGTTGTAAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACAGAAGCGTGGTGACCTCAGGATGATAGGGGCT > 1:435625/5‑141 CCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCA < 1:881540/88‑1 CTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTT < 4:404771/141‑1 ggtTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGACGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTA < 1:379281/138‑1 TTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGGAGGGACCTCAGGTTGTTAGGGGCTATTATGC > 2:595856/1‑141 TTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGC > 2:490720/1‑141 TGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAATGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCA < 4:240529/141‑1 GTTAGTGTCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCAT < 4:84641/141‑1 GTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCAT > 3:260823/1‑141 TTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGGAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGCAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATG > 1:734924/1‑141 TAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAGGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGC > 1:797514/1‑141 TAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCCTGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCCTTTATGCATGC > 1:304143/1‑141 TAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGC > 1:46381/1‑141 TAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGC > 1:606931/1‑141 AGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCG < 2:951361/141‑1 GGCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTA > 1:657345/1‑141 GCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAG > 2:260018/1‑98 GCTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAG < 1:260018/98‑1 TTTTATGTATGCGTTAATGCGAAGGCGTATGTGAGCGTAGTAACCGCAGGTTGTTAGGGACTTTTATGCATGCGCTAACGCGCAGGCGATCCGACGCGTAGTGACCTCTGGTTGTTAGGGGCTTTTATGCATGCGCTAAAG < 2:286040/141‑1 TTATGCATGCGCTAATGCGCAGGCGAACGGGAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCG < 2:215162/141‑1 TTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCG > 1:751578/1‑141 TTAAGCACGAGCTAAAGCGCACGCGAACAGAAGCGTAGTGACCAGAGGTAGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCG < 2:347719/141‑1 TATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGC > 1:901991/1‑141 TATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGC > 4:192356/1‑141 TATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACAGCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGC > 1:314777/1‑141 ATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCAAAAGCGaa > 4:273133/1‑139 ATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAG < 4:154934/114‑1 ATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAG > 3:154934/1‑114 TGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAG > 4:147311/1‑141 TGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAG > 4:315874/1‑141 GCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTCAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGG < 1:285213/141‑1 CATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGC > 4:60637/1‑141 CATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGC > 3:85721/1‑141 CATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGC < 3:29470/141‑1 CATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGA > 1:101870/1‑97 CATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGA < 2:101870/97‑1 CATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATCCATGCGCTAAAGCGCAGGCGAACCGAAACGTAATGACCCCAGGTTGATAGGTTCTTTTATGCATACGCTAAAGCGCAcgg > 4:111909/1‑138 ATGCGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCG < 3:301643/141‑1 CGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAAC < 3:275391/141‑1 CGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCAAAAGCAAAGGCGAAC > 3:98609/1‑141 CGCTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCNTTTATGCATGCGNTAAAGCGCAGGCGAAC < 1:845540/141‑1 GGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACCGGAGCGCAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2505018‑2504852‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgttaggggcttttatgcatgcgcTAAAGCGCAGGCGAACGGAAGCGTAGTGACCTCAGGTTGTTAGGGACTTTTATGCATGCGCTAAAGCGCAGGCGAACCGAAGCGTAGTGACCTCAGGTTGTTAGGGGCTTTTATGCATGCGCTAAAGCGCAGGCGAACC < USA300TCH1516_ALE/2505034‑2504896 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |