Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_012417	1	13	13	NA [0]	[1] 2	–/USA300HOU_RS14890	–/replication protein

TAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGG  >  NC_012417/9‑154      |                                                                                                                                             taataCTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCaa       <  1:346657/141‑1 (MQ=255)      ctactaGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAgg  >  4:7068/1‑141 (MQ=255)      |                                                                                                                                             TAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGG  >  NC_012417/9‑154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑