| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2000170 = | NA (NA) | 3 (0.120) | 3/244 | NT | NA | intergenic (‑1898/+1437) | USA300TCH1516_01882/USA300TCH1516_01883 | tRNA‑Val/tRNA‑Ala |
| ? | USA300TCH1516_ALE | 2000187 = | NA (NA) | intergenic (‑1915/+1420) | USA300TCH1516_01882/USA300TCH1516_01883 | tRNA‑Val/tRNA‑Ala | |||||
TGGCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2000315‑2000170‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacaatCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTTTC > USA300TCH1516_ALE/2000187‑2000325 TGGCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTG < 2:168394/140‑1TGGCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTG < 2:105706/140‑1TGGCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTG > 2:278887/1‑140 GCGTTGCCCAGACAGCTAGGATGTTAGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACATTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGATGCTGTGGATTGTCCTTTGGA < 1:194101/140‑1 GCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGGTTGTCCTTTGGA > 1:52447/1‑140 GCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGA > 1:196370/1‑140 CGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGAC > 2:38052/1‑140 GTTGCCCAGACTACTAGGCTGTTGGCTTAGAAGCAGCCCTCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCTAAAATGTACCGGGGCTAAACATCTTACCGAAGCTGTGGATTGTTCTTTGGACA < 2:244425/140‑1 TTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGACAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAA > 2:175651/1‑140 TGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGGGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAAT < 2:99254/140‑1 AGAAGCAGCCATCAATTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCC < 1:150203/140‑1 GCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCAAAGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGG < 1:276412/140‑1 TCCTTTGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCCATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTCGTTCTCTGGGCAACGC > 2:282389/1‑140 CTTTGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTTTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAGCATCCTAGTTGTCTGGGCAACGCCA > 1:193757/1‑140 aagtACACTCCACAGCTGCGNTNATANGTTTAGCCCCTGTACATTTTCGGCGCAGTGTCCCTCGACTAGTGAGCTATTACGCACTATTTAAATGATGGCTGCTTCTAAGCCAACATCCTTGTTGTCTGGGCAACGCCACA < 1:207550/136‑1 cggtCAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACAT < 1:567/136‑1 TGGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTTTGGGCTACGCaccgt > 2:181543/1‑135 ggcCAATCCACCGCCTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATC < 2:169533/137‑1 GGACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATC < 2:240830/140‑1 GACAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCC < 2:187828/140‑1 aaAATCCAGAGCCTCGGTAATATGTTTAGCCGCGGTACATTTTCGGCGCAGTGTCTCTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCT < 2:169286/138‑1 CAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGCGCTATTTTGCCCTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTT > 1:92032/1‑140 CAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTT > 2:269765/1‑140 CAATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGATGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTT > 2:104743/1‑140 CAATCCACAACTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCACCATCCTAGTTGTCTGGGCAACGCCACATCCTT > 2:202052/1‑140 atTCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTCTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTT < 1:281614/138‑1 AATCCCCAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTgt < 2:117216/140‑3 AATCCACTGCTTCGATAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAACGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTT < 1:44029/140‑1 AATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTT < 1:162371/140‑1 AATCCACAGCTTCGGTAATATGTTTAGCCCCGCTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATTCTTT < 1:217103/140‑1 ATCCACAGCTTCGGTAATATTTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTTT < 1:50203/140‑1 ATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTTT > 1:243303/1‑140 ATCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTTT < 1:203387/140‑1 TCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTTTC < 1:65068/140‑1 TCCACAGCTTCGGTAATATGCTTAGCCACGGTACACTTTCGGCCCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTATGGGCAACGCCACATCCTTTTC > 2:302545/1‑140 TGGCGTTGCCCAGACAACTAGGATGTTGGCTTAGAAGCAGCCATCATTTAAAGAGTGCGTAATAGCTCACTAGTCGAGTGACACTGCGCCGAAAATGTACCGGGGCTAAACATATTACCGAAGCTGTGGATTGTCCTTTGGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2000315‑2000170‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggacaatCCACAGCTTCGGTAATATGTTTAGCCCCGGTACATTTTCGGCGCAGTGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTCTGGGCAACGCCACATCCTTTTC > USA300TCH1516_ALE/2000187‑2000325 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |