New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1205323177 (0.950)39 (0.210) 5/296 17.5 18.1% intergenic (‑204/‑365) USA300HOU_RS15290/lspA hypothetical protein/Lipoprotein signal peptidase
?USA300TCH1516_ALE 1205383 = 175 (0.940)intergenic (‑264/‑305) USA300HOU_RS15290/lspA hypothetical protein/Lipoprotein signal peptidase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 178 total aligned reads displayed.

GAATTTGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGTCTTTTT  >  USA300TCH1516_ALE/1205175‑1205471
                                                                                                                                                    |                                                                                                                                                    
aaaTTTGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGaa                                                                                                                                                      <  2:486786/148‑1 (MQ=255)
 aaTTTGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAATTTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGATACGGCACCCTAGGAAg                                                                                                                                                     >  2:1700330/1‑149 (MQ=255)
 aaTTTGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGTCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg                                                                                                                                                     >  2:866540/1‑149 (MQ=255)
 aaTTTGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATGTAAAAGTAAAGTTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAg                                                                                                                                                     >  2:1553646/1‑149 (MQ=255)
     tGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAc                                                                                                                                                 >  2:1185562/1‑149 (MQ=255)
           aTTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCcatca                                                                                                                                           <  1:1218132/149‑1 (MQ=255)
                 tgtAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCaaaa                                                                                                                                     <  1:744808/149‑1 (MQ=255)
                   tagcctaTTCATGTCTTATTTCTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGGGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAt                                                                                                                                   <  2:498375/143‑1 (MQ=255)
                   tAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAt                                                                                                                                   <  1:1721306/149‑1 (MQ=255)
                    aGACGATTCATTTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                                  <  1:490847/149‑1 (MQ=255)
                    aGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                                  <  1:346512/149‑1 (MQ=255)
                    aGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                                  <  1:38727/149‑1 (MQ=255)
                    aGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                                  <  2:1047531/149‑1 (MQ=255)
                    aGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAAtt                                                                                                                                  <  2:662898/149‑1 (MQ=255)
                       cGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGCCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGAACCCTAGGGAGGGACCCATCATCAAAAATTCTa                                                                                                                               <  1:989699/149‑1 (MQ=255)
                       cGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTa                                                                                                                               <  1:9273/149‑1 (MQ=255)
                       cGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGCTATAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTa                                                                                                                               <  1:1968378/149‑1 (MQ=255)
                        gATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt                                                                                                                              <  2:1477596/149‑1 (MQ=255)
                        gATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGATGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt                                                                                                                              >  1:1356073/1‑149 (MQ=255)
                        gATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTCAGCGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt                                                                                                                              >  1:1461722/1‑149 (MQ=255)
                        gATTCATGTCTTATTTTTTTAAAGGATTGAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTAt                                                                                                                              <  1:383185/149‑1 (MQ=255)
                         aTTCATCGCTTATTTTTTTAAAGTATTTAAAAGTAATTGTACATGTTAAGACTTAGTATTAAAGGCGATATGTCTGACGAAGCATTGCCAGTCGAAGAGCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTTTagt                                                                                                                             <  2:718483/149‑3 (MQ=17)
                               gTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGa                                                                                                                       >  2:282327/1‑149 (MQ=255)
                                 cTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGCCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGAGCCATCATCAAAAATTCTATTTATAGAAt                                                                                                                     >  1:854382/1‑149 (MQ=255)
                                 cTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAt                                                                                                                     >  1:427424/1‑149 (MQ=255)
                                  ttATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGTAGCAGTGCCAGTCGAAGACCGAGGCTGCTACGGCACCCCAGGAAGGGACGCATCATCAAAAATTCTATTTATAGAAtt                                                                                                                    >  1:299267/1‑149 (MQ=17)
                                  ttATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAAtt                                                                                                                    >  1:118072/1‑149 (MQ=255)
                                     tttttttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTa                                                                                                                 >  1:1239149/1‑149 (MQ=255)
                                     tttttttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGACGAGACTCCTGAGGGAGCAGTTCCAGTCGAAGACAGAGGCTGAGACGGCAACCTAGGAAGGAACCCATCATCAAAAATTCTTATTTTAGAATTTTa                                                                                                                 >  2:1105414/1‑149 (MQ=17)
                                      ttttttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAAACTAGAATGGGACCCATCATCAAAAATTCTATTTATAGAATTTTAc                                                                                                                >  1:370443/1‑149 (MQ=255)
                                         tttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACaat                                                                                                             >  1:271340/1‑147 (MQ=255)
                                         tttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGt                                                                                                             >  2:1344638/1‑149 (MQ=255)
                                         tttAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCAAGAGGGAGCAGTGCCAGACGAAGACCGAGGCTAAGACGGCACCCTCGGCAGGGACCCATACTCATAGATCCGAATTAGATAATTTTACatt                                                                                                             >  2:1888709/1‑147 (MQ=14)
                                              aGTATTTAAAAGTAAAATTACATGTTAATCCGTGGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTGATAGAATTTTACAGTAAtgt                                                                                                        >  1:184260/1‑149 (MQ=255)
                                                  tttAAAAGGAAAATTACATGTTAATACGTAGTATTAATGGCGAGACGCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCa                                                                                                    <  2:310675/149‑1 (MQ=255)
                                                      aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCACAAATTCTATTTATAGAATGTTAAAGTAATGTGCCAGGTg                                                                                                >  1:1448119/1‑149 (MQ=255)
                                                      aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATg                                                                                                >  1:1950746/1‑149 (MQ=255)
                                                      aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATg                                                                                                >  1:302878/1‑149 (MQ=255)
                                                      aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATg                                                                                                >  1:1653095/1‑149 (MQ=255)
                                                      aaaGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATg                                                                                                >  2:196561/1‑149 (MQ=255)
                                                        aGTAAAATGACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATggg                                                                                              <  1:79350/149‑1 (MQ=255)
                                                         gTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACACATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTACAAGATggga                                                                                             >  2:542373/1‑148 (MQ=255)
                                                                tACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGa                                                                                      <  2:324618/149‑1 (MQ=255)
                                                                 aCATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGaa                                                                                     <  1:615340/149‑1 (MQ=255)
                                                                   aTGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGc                                                                                   <  2:1739485/149‑1 (MQ=255)
                                                                       tAATACTTAGTATTAATGGCGAGACTCCTGAGGGACCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCCTCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                                                                               <  1:887429/149‑1 (MQ=255)
                                                                       tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTTCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCATATGGGCATAGCGAAGCCAtt                                                                               <  1:1416068/149‑1 (MQ=255)
                                                                       tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                                                                               <  1:113893/149‑1 (MQ=255)
                                                                        aaTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTc                                                                              <  1:1996989/149‑1 (MQ=255)
                                                                          tACGTAGTATTAATGGCGAGACTCCTGGGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCAAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATCTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATACaa                                                                            >  1:1061724/1‑149 (MQ=255)
                                                                           aCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                                                                           <  1:1939143/149‑1 (MQ=255)
                                                                           aCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                                                                           >  1:1638085/1‑149 (MQ=255)
                                                                           aCGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGACGGGCATAGCGAAGCCATTCAAt                                                                           <  1:1107072/149‑1 (MQ=255)
                                                                            cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGACGACAGAGGCTGAGACGGCGCCCTAGGTAGGGACCCATCATCAAAAATTCTATTCATAGACTTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                          >  2:3421/1‑149 (MQ=21)
                                                                            cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCCTAGCGAAGCCATTCAATa                                                                          >  1:715655/1‑149 (MQ=255)
                                                                            cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                          >  1:818358/1‑149 (MQ=255)
                                                                            cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                          >  1:920971/1‑149 (MQ=255)
                                                                                gtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGaa                                                                      <  2:647636/149‑1 (MQ=255)
                                                                                ggaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGaa                                                                      <  2:1392033/147‑1 (MQ=255)
                                                                                ataTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCCAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGaa                                                                      <  1:1127937/148‑1 (MQ=255)
                                                                                  aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGt                                                                    <  2:1771907/149‑1 (MQ=255)
                                                                                   ttAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTa                                                                   <  2:82157/149‑1 (MQ=255)
                                                                                     aaTGGCGCGACTCTTTAGGTAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt                                                                 <  1:1751698/149‑1 (MQ=255)
                                                                                     aaTGGCGAGCCTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt                                                                 <  1:1788953/149‑1 (MQ=255)
                                                                                     aaTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTAtt                                                                 <  1:1818695/149‑1 (MQ=255)
                                                                                         gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtat                                                             >  2:1038706/1‑149 (MQ=255)
                                                                                         gCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTAAATACGACGTATTTtat                                                             >  2:1628319/1‑149 (MQ=255)
                                                                                          cGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTGACAGTAATGTGCCAGATGGGCATAGCGAATCCATTCAATACGAAGTATTGtata                                                            >  1:467594/1‑149 (MQ=255)
                                                                                          cGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATGTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtata                                                            >  1:524881/1‑149 (MQ=255)
                                                                                               cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGACAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                                       >  2:556255/1‑149 (MQ=255)
                                                                                                  cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAgaga                                                    >  2:1717901/1‑149 (MQ=255)
                                                                                                    tcgggAGCAGTCCCAGTCGAAGACCGAGGCTGATACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTATACAGTCATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAc                                                  <  2:56755/147‑1 (MQ=255)
                                                                                                     aGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAca                                                 >  1:432404/1‑149 (MQ=255)
                                                                                                          gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGTACCCTTGGAAGGGTCCTATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGt                                            <  1:1354411/149‑1 (MQ=255)
                                                                                                          gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGt                                            >  1:170849/1‑149 (MQ=255)
                                                                                                           cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTa                                           <  1:572313/149‑1 (MQ=255)
                                                                                                           cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTa                                           <  1:924062/149‑1 (MQ=255)
                                                                                                           cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCACTTTGATACGAAGTATTGTATAAATAGAGAACAGCAGTa                                           <  1:1984968/149‑1 (MQ=255)
                                                                                                           aaGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTa                                           <  1:1011683/148‑1 (MQ=255)
                                                                                                             gcaccAGTCGAAGAATGAAGCTGAGACGGCACCCTAGGAAGGAAAAAAAAAAAAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAg                                         <  2:1179982/146‑1 (MQ=11)
                                                                                                             gTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAg                                         <  2:1522289/149‑1 (MQ=255)
                                                                                                                  aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAt                                    <  1:1523392/149‑1 (MQ=255)
                                                                                                                          aCCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAAtt                            <  1:634937/149‑1 (MQ=255)
                                                                                                                             gAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGGGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACCTCAGTAAGATAATTTTTAATTAGa                         <  1:997896/149‑1 (MQ=255)
                                                                                                                                 cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAat                     <  2:1335322/149‑1 (MQ=255)
                                                                                                                                 cTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAat                     <  2:1311346/149‑1 (MQ=255)
                                                                                                                                       cGGCATCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTta               <  2:1744699/149‑1 (MQ=255)
                                                                                                                                       cGGCACCCTATGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTta               <  2:1620963/149‑1 (MQ=255)
                                                                                                                                       cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTta               <  2:1077672/149‑1 (MQ=255)
                                                                                                                                       cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTta               <  2:205635/149‑1 (MQ=255)
                                                                                                                                         gCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtact             <  2:202509/149‑1 (MQ=255)
                                                                                                                                         gCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtact             <  1:1595221/149‑1 (MQ=255)
                                                                                                                                         gCACCCTAGGAAGGGACCAATCATCAAACATTCTCTTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATATGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtact             <  1:1157137/149‑1 (MQ=255)
                                                                                                                                           aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTtactac           >  2:1825352/1‑149 (MQ=255)
                                                                                                                                              cTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGt        <  2:1638085/149‑1 (MQ=255)
                                                                                                                                                aGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGTCt      <  1:21758/149‑1 (MQ=255)
                                                                                                                                                 ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGTCtt     <  1:790269/149‑1 (MQ=255)
                                                                                                                                                  gAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAACATATCTTACTACTGTCttt    >  2:671039/1‑149 (MQ=255)
                                                                                                                                                    aGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGTGttttt  >  1:336463/1‑149 (MQ=255)
                                                                                                                                                    aGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGTCttttt  <  1:626035/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GAATTTGTCCAATTAAGTGTAGACGATTCATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAATATCTTACTACTGTCTTTTT  >  USA300TCH1516_ALE/1205175‑1205471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.