New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 705321 =185 (0.990)5 (0.030) 5/278 16.8 2.7% intergenic (+1071/+89) nhaK_1/mntA Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA
?USA300TCH1516_ALE 705378 = 186 (1.060)intergenic (+1128/+32) nhaK_1/mntA Sodium, potassium, lithium and rubidium/H(+) antiporter/Manganese‑binding lipoprotein MntA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 194 total aligned reads displayed.

ATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGATATCTT  >  USA300TCH1516_ALE/705231‑705525
                                                                                                                                                   |                                                                                                                                                   
atatCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatca                                                                                                                                                    <  1:1810030/149‑1 (MQ=255)
atagCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatca                                                                                                                                                    <  1:920928/149‑1 (MQ=255)
 aatCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGcatcaacatcaa                                                                                                                                                   <  2:1894606/148‑1 (MQ=255)
   tCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGGCTATTAGCCTTCGACTTTGTTTTGTTGATGTGTGGCCTAAAATATTGGAGATAACAATATTTTAAGTTGAGTCAACATCAAtt                                                                                                                                                 >  1:1413944/1‑149 (MQ=255)
   tCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAAtt                                                                                                                                                 >  2:648784/1‑149 (MQ=255)
   tCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAAtt                                                                                                                                                 >  2:637466/1‑149 (MQ=255)
   tCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACAAATATTTTAGGTTGCATCAACATCAAtt                                                                                                                                                 >  1:1659985/1‑149 (MQ=255)
              ggAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTc                                                                                                                                      >  1:195282/1‑149 (MQ=255)
              ggAACGGTATATATATTAATAGGAGGGTAATAGATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTc                                                                                                                                      <  2:696675/149‑1 (MQ=255)
                aaCGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATAAACATCAATTCATCTTACTTCAt                                                                                                                                    >  1:226749/1‑149 (MQ=255)
                    gTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTaaa                                                                                                                                <  2:1519969/149‑1 (MQ=255)
                    gTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTaaa                                                                                                                                <  2:297138/149‑1 (MQ=255)
                          atgttAATGGGAGGGTAATATATATTTAACGCACGATAGGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAg                                                                                                                          <  1:247026/146‑1 (MQ=255)
                           tatTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGc                                                                                                                         >  1:1729740/1‑149 (MQ=255)
                            atTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCTTTAAAACACAGCg                                                                                                                        >  1:639551/1‑149 (MQ=255)
                             ttAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgt                                                                                                                       <  2:844859/149‑1 (MQ=255)
                              tAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgtg                                                                                                                      >  2:9464/1‑149 (MQ=255)
                               aaTAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCgtgt                                                                                                                     >  2:1625775/1‑149 (MQ=255)
                                aTAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGtt                                                                                                                    >  2:1470209/1‑149 (MQ=255)
                                aTAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGGGtt                                                                                                                    >  2:142253/1‑149 (MQ=255)
                                aTAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGGGtt                                                                                                                    >  2:1632866/1‑149 (MQ=255)
                                  aggaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTAt                                                                                                                  >  1:1767911/1‑149 (MQ=255)
                                    gaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGGAGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTTATCTTACTTCATTAAAAGACAGAGTGTTAttt                                                                                                                >  2:222258/1‑149 (MQ=255)
                                    gaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTAttt                                                                                                                >  1:674684/1‑149 (MQ=255)
                                    gaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTAttt                                                                                                                >  1:792522/1‑149 (MQ=255)
                                    gaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTAttt                                                                                                                >  1:1840243/1‑149 (MQ=255)
                                    gaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTAttt                                                                                                                >  2:1633745/1‑149 (MQ=255)
                                    gaggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGGGTTAttt                                                                                                                >  1:1530925/1‑149 (MQ=255)
                                     aggGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTc                                                                                                               >  1:1510993/1‑149 (MQ=255)
                                            tatatatTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACAAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCAttcttc                                                                                                        >  2:398184/1‑149 (MQ=255)
                                            tatatagTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTc                                                                                                        <  2:838377/149‑1 (MQ=255)
                                              tatatTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCg                                                                                                      <  1:298823/149‑1 (MQ=255)
                                               atatTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCgt                                                                                                     <  1:1165363/149‑1 (MQ=255)
                                                tatTTAACGCACGATATGGGACTATTAGCCATCGCCTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCCTGCTTCCgtg                                                                                                    >  2:1066034/1‑149 (MQ=255)
                                                  tttAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTa                                                                                                  >  2:1014747/1‑149 (MQ=255)
                                                  tttAAAGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTa                                                                                                  >  2:1839494/1‑149 (MQ=255)
                                                   ttAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTAc                                                                                                 >  2:579560/1‑149 (MQ=255)
                                                   ttAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACAAAGCGTGTTATTTCATGCTTCCGTGTAc                                                                                                 >  2:1493697/1‑149 (MQ=255)
                                                   ttAACGCACGATATGGGACTATTAGCCTACGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATAAATTGCTCTTACTTCATTAAAACACAGCGTGTTATTACATCCTTCCgttttc                                                                                                 >  1:1252814/1‑145 (MQ=255)
                                                     aaCGCAGGATATGGTACTATTAGCCTTCGAATTTGTTATGTTGATGTGTCGCCTAAAATATTGGATATACCAATATTTTAGTTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAg                                                                                               <  2:35789/149‑1 (MQ=255)
                                                     aaCGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTCCAg                                                                                               >  2:115113/1‑149 (MQ=255)
                                                      aCGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGt                                                                                              >  1:1703755/1‑149 (MQ=255)
                                                      aCGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGt                                                                                              >  2:1692230/1‑149 (MQ=255)
                                                      aCGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGt                                                                                              >  2:1206202/1‑149 (MQ=255)
                                                      aCGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTAGACTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGAGTGTTATTTTATGCTTCCGTGTTCAGt                                                                                              >  2:1301292/1‑149 (MQ=255)
                                                       cGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGtt                                                                                             >  1:1119827/1‑149 (MQ=255)
                                                        tcACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGttt                                                                                            <  2:1186125/148‑1 (MQ=255)
                                                        gCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGttt                                                                                            >  1:1633682/1‑149 (MQ=255)
                                                          aCGATCTCGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCa                                                                                          <  1:135275/149‑1 (MQ=255)
                                                                  ggACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTATAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGa                                                                                  >  1:1849117/1‑149 (MQ=255)
                                                                       aTTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTtca                                                                             >  1:456569/1‑149 (MQ=255)
                                                                           gCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTcatcat                                                                         >  2:1348389/1‑149 (MQ=255)
                                                                            ccTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAtt                                                                        >  1:711138/1‑149 (MQ=255)
                                                                            ccTTCGACTTTGTTATGTCGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAtt                                                                        <  1:501809/149‑1 (MQ=255)
                                                                             cTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAttt                                                                       <  1:1554412/149‑1 (MQ=255)
                                                                             cTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAttt                                                                       <  2:1767911/149‑1 (MQ=255)
                                                                             cTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCAttt                                                                       <  2:939041/149‑1 (MQ=255)
                                                                               tCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTGCAATATTTGATTTCATCATTTTg                                                                     <  1:1004143/149‑1 (MQ=255)
                                                                                cGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgt                                                                    <  1:1206202/149‑1 (MQ=255)
                                                                                 gACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGCTTTCATCATTTTgta                                                                   >  1:1643651/1‑149 (MQ=255)
                                                                                 gACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgta                                                                   <  2:1883421/149‑1 (MQ=255)
                                                                                  aCTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgtag                                                                  <  1:579560/149‑1 (MQ=255)
                                                                                    tttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTgtagta                                                                >  2:1606499/1‑149 (MQ=255)
                                                                                     ttGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTaa                                                               >  1:489807/1‑149 (MQ=255)
                                                                                           tGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCa                                                         >  1:1876492/1‑149 (MQ=255)
                                                                                           tGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATAAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATATCATCATTTTGTAGTAAGAGTCa                                                         >  2:1493155/1‑149 (MQ=255)
                                                                                            gTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCAc                                                        >  1:2002636/1‑149 (MQ=255)
                                                                                              ttaTGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCt                                                      <  1:1720498/147‑1 (MQ=255)
                                                                                                    gtgGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTg                                                <  1:656219/149‑1 (MQ=255)
                                                                                                        ccTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCctt                                            >  2:754070/1‑149 (MQ=255)
                                                                                                        ccTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCctt                                            >  2:956802/1‑149 (MQ=255)
                                                                                                         cTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCcttc                                           >  2:1991704/1‑149 (MQ=255)
                                                                                                             aaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGGCTTCtttc                                       >  1:1949547/1‑148 (MQ=255)
                                                                                                             aaTATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTa                                       >  1:159447/1‑149 (MQ=255)
                                                                                                               tatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTAcc                                     <  1:328481/149‑1 (MQ=255)
                                                                                                               tatTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTAcc                                     <  1:1625775/149‑1 (MQ=255)
                                                                                                                 ttGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGa                                   <  2:195282/149‑1 (MQ=255)
                                                                                                                   ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGAtt                                 >  1:347155/1‑149 (MQ=255)
                                                                                                                   ggAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGAtt                                 >  1:832333/1‑149 (MQ=255)
                                                                                                                    gagaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTg                                >  2:567268/1‑149 (MQ=255)
                                                                                                                    gagaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTg                                >  2:954379/1‑149 (MQ=255)
                                                                                                                     agaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAAGATTGGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGa                               >  1:1965228/1‑149 (MQ=255)
                                                                                                                      gaTACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTTCCGATTGat                              >  1:131995/1‑148 (MQ=255)
                                                                                                                            aaTATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCGTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTACGAGTCACCTTTAGGTGCTTCTTTACCGATTGAATCtgtg                        >  1:147728/1‑149 (MQ=255)
                                                                                                                                 tttAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTacac                   >  1:315831/1‑149 (MQ=255)
                                                                                                                                   tAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGCCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACtt                 >  2:40083/1‑149 (MQ=255)
                                                                                                                                       ttGCATCAACATCAATTCGTCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCAcc             >  1:1466365/1‑149 (MQ=255)
                                                                                                                                       ttGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTGCACTTCAcc             >  1:393368/1‑149 (MQ=255)
                                                                                                                                       ttGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGATGCAATATTTGAGTTCATCCTTTTGTATTATGAGTCACCTTTAGTACCTTCTTTACCGATTGAAGCTGTATACACTTCAcc             >  1:982722/1‑149 (MQ=255)
                                                                                                                                        tGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCa            <  2:849265/149‑1 (MQ=255)
                                                                                                                                        tGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCa            >  1:1637457/1‑149 (MQ=255)
                                                                                                                                        tGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCa            >  1:288903/1‑149 (MQ=255)
                                                                                                                                        tGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCa            >  1:53407/1‑149 (MQ=255)
                                                                                                                                         tcatcaacatcaaTTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCaa           <  2:479445/148‑1 (MQ=255)
                                                                                                                                         gCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCaa           <  1:212255/149‑1 (MQ=255)
                                                                                                                                              aacgtcaaTTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGata      >  2:1523610/1‑149 (MQ=255)
                                                                                                                                              aacatcaaTTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGata      >  2:1578514/1‑149 (MQ=255)
                                                                                                                                                catcaaTTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGATAtc    >  2:61550/1‑149 (MQ=255)
                                                                                                                                                catcaaTTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGATAtc    >  1:10242/1‑149 (MQ=255)
                                                                                                                                                  tcaaTTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGATAtctt  <  1:82469/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
ATATCGTGCGATCGGGAACGGTATATATATTAATAGGAGGGTAATATATATTTAACGCACGATATGGGACTATTAGCCTTCGACTTTGTTATGTTGATGTGTGGCCTAAAATATTGGAGATACCAATATTTTAGGTTGCATCAACATCAATTCATCTTACTTCATTAAAACACAGCGTGTTATTTCATGCTTCCGTGTACAGTTTCAATATTTGATTTCATCATTTTGTAGTAAGAGTCACCTTTAGTGCCTTCTTTACCGATTGAATCTGTGTACACTTCACCAAAGATATCTT  >  USA300TCH1516_ALE/705231‑705525

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.