Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_012417	1	97	97	NA [0]	[7] 8	–/USA300HOU_RS14890	–/replication protein

ATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGGCTTTTAATGTAAAACAATGTGGTAATATTTTAGAATTTAAGCCAACTGATGAAGGCTATTTGAAGTTACATAAGACATGGTTTTGTAAATCA  >  NC_012417/6‑246                                                                                             |                                                                                                                                                     atatCATACTACTAGTAGTATAACCGAAAATCAAGATAATAAAACGGTAACAGAGATGACGAAAAGTGGGAAACAACGCCCATGGAGAGGAAAGAAAAGAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAgg                                                                                              >  2:242689/1‑149 (MQ=255)              aGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGGCTTTTAATGTaaa                                                                                 <  1:1118460/149‑1 (MQ=255)                aaGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGGCTTTTAATGTaaaaa                                                                               >  2:1584114/1‑148 (MQ=255)                aaGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGGCTTTTAATGTAAAAc                                                                               >  1:691211/1‑149 (MQ=255)                    ataACCGAAAATCAAGATAATAAAACGCGAAAAGATATGACGAAAAGTGGGAAACAACGCCCCTGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAGATTTTAAAAATCAAAAAGGCTTTTAATGTAAAACAAtg                                                                           >  1:1298296/1‑149 (MQ=255)                      aaCCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATATTAAAAATCAAAAAGGCTTTTAATGTAAAAAAAtgtg                                                                         >  2:80266/1‑149 (MQ=255)                                                                 aGTGGGAAACAACGACCATGGAGAGAAAAGAAAAGAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAAAAAAAAAGGCTTTTAATGTAAAACAATGTGGTAATATTTTAGAATTTAAGCCAACTGATGAAGGCTATTTGaa                              <  2:176407/149‑1 (MQ=255)                                                                                             agaaaaTAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGGCTTTTAATGTAAAACAATGTGGTAATATTTTAGAATTTAAGCCAACTGATGAAGGCTATTTGAAGTTACATAAGACATGGTTTTGTAAATCa  >  2:143115/1‑149 (MQ=255)                                                                                             |                                                                                                                                                     ATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGAGAGAAAAGAAAATAGATAATGTAAGCTATGCAGATATACTAGAAATTTTAAAAATCAAAAAGGCTTTTAATGTAAAACAATGTGGTAATATTTTAGAATTTAAGCCAACTGATGAAGGCTATTTGAAGTTACATAAGACATGGTTTTGTAAATCA  >  NC_012417/6‑246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑