Predicted mutation
evidence seq id position mutation annotation gene description
RA CP000731 81 N→G intergenic (–/‑151) – / → repA –/replication protein A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000731810NG99.4% 4315.2 / NA 1205intergenic (–/‑151)–/repA–/replication protein A
Reads supporting (aligned to +/- strand):  ref base N (0/0);  major base G (714/477);  minor base A (2/5);  total (717/488)
Fisher's exact test for biased strand distribution p-value = 1.25e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1205 total aligned reads displayed.

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTT  >  CP000731/1‑228
                                                                                                                                                |                                                                                                                                                   
tttatgatatttatcaagggtttataagcccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAAc                                                                                                                                                 <  1:1493078‑M1/85‑1 (MQ=255)
 ttatgatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACt                                                                                                                                                >  2:832865‑M1/64‑149 (MQ=255)
  tattatatttatcaagggtttataaacccttgataaagctttatttacccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAACCTg                                                                                                                                               >  2:1763696‑M1/63‑149 (MQ=255)
    tgatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtt                                                                                                                                             >  1:1673863‑M1/61‑149 (MQ=255)
    tgatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtt                                                                                                                                             <  2:1133491‑M1/89‑1 (MQ=255)
     tatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGGTTGGTAATAAAACGTTTAGAAACTGttt                                                                                                                                            >  1:1989215‑M1/60‑149 (MQ=255)
     gatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                                                                                                            <  1:786331‑M1/90‑1 (MQ=255)
     gatatttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGttt                                                                                                                                            >  1:1930440‑M1/60‑149 (MQ=255)
       tatttatcaagggtttataaaccattgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATCGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttat                                                                                                                                          <  1:1006588‑M1/92‑1 (MQ=255)
         tttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattt                                                                                                                                        >  2:74383‑M1/56‑149 (MQ=255)
         tttatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGtttattt                                                                                                                                        <  1:1080391‑M1/94‑1 (MQ=255)
           tatcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTttatttat                                                                                                                                      >  2:1454642‑M1/54‑149 (MQ=255)
             tcaagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatat                                                                                                                                    <  1:1142947‑M1/98‑1 (MQ=255)
              caagggtttataaacccttgataaagctatattttcccttttatcagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTAGTAATAGTCGGGGTTTGGTAATAAAACGNGNAGAAAGtgtttatttatcta                                                                                                                                   <  1:1114802‑M1/99‑4 (MQ=255)
              caagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTtatata                                                                                                                                   <  1:1264572‑M1/99‑1 (MQ=255)
               aagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATaa                                                                                                                                  <  1:90986‑M1/100‑1 (MQ=255)
               aagggtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATaa                                                                                                                                  <  2:1617504‑M1/100‑1 (MQ=255)
                   gtttataaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAAtttt                                                                                                                              <  1:1705138‑M1/104‑1 (MQ=255)
                        taaacccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATa                                                                                                                         <  1:59522‑M1/109‑1 (MQ=255)
                          aaccctttataaagctattgtttcccttttataagtttCTTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                                       >  2:91361‑M1/39‑149 (MQ=255)
                          aacccttgataaagctatcttttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                                       >  1:721533‑M1/39‑149 (MQ=255)
                          aacccttgataaagctatattttcccttttataagtttAATTCAAGTGCTATAATCAACTTAATATAACAAAAACTCCAACTACTGGTAATAAACAGGGTTTGGTAATAAAACGTGTAGAAACTGTTTATTTATATAATTTTCGATACt                                                                                                                       <  2:34646‑M1/111‑1 (MQ=255)
                           acccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                                                                                                      <  1:1057559‑M1/112‑1 (MQ=255)
                           acccgtggtaaagctatattttccgttgtttaagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCACCTCCTGGTAATAGTCTGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACtt                                                                                                                      >  1:360082‑M1/38‑149 (MQ=255)
                            cccttgataaagctagattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTg                                                                                                                     >  1:1192297‑M1/37‑149 (MQ=255)
                             ctttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                                                                                                    >  1:1863969‑M1/36‑149 (MQ=255)
                             ccttgataaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGt                                                                                                                    >  2:955456‑M1/36‑149 (MQ=255)
                                tgataaagttatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGtatt                                                                                                                 >  2:1724731‑M1/33‑149 (MQ=255)
                                    aaagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAGCTGTTTATTTATATAATTTTCGATACTTGTATtatat                                                                                                             >  1:1530228‑M1/29‑149 (MQ=255)
                                     aagctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATtatata                                                                                                            >  2:1588224‑M1/28‑149 (MQ=255)
                                      agctatattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                                                                                                           <  2:1651079‑M1/123‑1 (MQ=255)
                                      agctatattttcccttttataagtttATTTAAAGGGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                                                                                                           >  1:804883‑M1/27‑149 (MQ=255)
                                      agctatattttcccttttataagcttATTTAAAGTGCTATAATAAACTTAATATAACAAAACCCCCAACCCCTGGTAACAGTCGGCGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATaa                                                                                                           >  2:1097893‑M1/27‑149 (MQ=255)
                                          ttatttacccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaa                                                                                                       >  2:724896‑M1/23‑149 (MQ=255)
                                          atattttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACACAAACCCCAACTCCTGGTAATAGTCGGGGTTTGGTAATAAAACGGTTAGAACCTGTTTATTTATATAATTTTCGATATTTGTATTATATAATGaa                                                                                                       <  2:510700‑M1/127‑1 (MQ=255)
                                            attttcccttttataagtttATTTAAAGTGCTATAATAAAGTTAATATAACAAAAACCCCAACTACTGGTGATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                                                                                                     <  1:1435604‑M1/129‑1 (MQ=255)
                                            attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                                                                                                     <  2:1182667‑M1/129‑1 (MQ=255)
                                            attttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaata                                                                                                     >  1:1041866‑M1/21‑149 (MQ=255)
                                              tttcccttttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGaataat                                                                                                   <  2:1413504‑M1/131‑1 (MQ=255)
                                                     tttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAg                                                                                            >  1:484800‑M1/12‑149 (MQ=255)
                                                      ttataagtttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATatcttggt                                                                                           >  2:1235644‑M1/11‑146 (MQ=255)
                                                             tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa                                                                                    >  1:1379660‑M1/4‑149 (MQ=255)
                                                             tttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCa                                                                                    >  2:659676‑M1/4‑149 (MQ=255)
                                                              ttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc                                                                                   <  1:510961‑M1/147‑1 (MQ=255)
                                                              ttATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAc                                                                                   >  1:1629334‑M1/3‑149 (MQ=255)
                                                               tATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCAcc                                                                                  >  1:642718‑M1/2‑149 (MQ=255)
                                                                 tttAAAGTGCTATAATAACCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTa                                                                                <  2:314630/149‑1 (MQ=255)
                                                                    aaaGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCGAAAt                                                                             >  1:254507/1‑149 (MQ=255)
                                                                     aaGTGCTATAATAAACTTAATATAACAACAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAGAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATc                                                                            >  1:1219695/1‑149 (MQ=255)
                                                                      aGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGAACCTCAATCa                                                                           >  2:807794/1‑149 (MQ=255)
                                                                       gTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAt                                                                          >  2:155515/1‑149 (MQ=255)
                                                                        tGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGGATAATATCTTAGTGCAAGCAACTAAATCAtt                                                                         >  2:1885833/1‑149 (MQ=255)
                                                                             taataaACTTAATATAACAAAAACCCCAACTACTGGTAATCGTCGGGGTTTGGTAATAAAACGTTTAGAAAATGTTTATTTATATAATTTTCGATACTTGTATTATCTAATGAATAATATCTTAGTGCAACCGCCTAAATCCTtaaata                                                                    >  1:754827/1‑149 (MQ=255)
                                                                               ataaACTTAATATAATAAAAACCCCGACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAAGGAATAATATCTTAGTGCAAGCACCTAAATCATtaaataaa                                                                  <  2:397900/149‑1 (MQ=255)
                                                                                taaACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATAATTaaataaat                                                                 >  2:282125/1‑149 (MQ=255)
                                                                                  aaCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGt                                                               <  1:1755018/149‑1 (MQ=255)
                                                                                   aCTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTa                                                              >  2:866463/1‑149 (MQ=255)
                                                                                        atatAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCt                                                         >  1:1900682/1‑149 (MQ=255)
                                                                                         tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCta                                                        >  2:1960650/1‑149 (MQ=255)
                                                                                         tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCta                                                        >  1:1324386/1‑149 (MQ=255)
                                                                                         tataACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCta                                                        >  1:615533/1‑149 (MQ=255)
                                                                                            aaCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaat                                                     >  1:426245/1‑149 (MQ=255)
                                                                                            aaCAAAAACCCCAACTACTGGTAACAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaat                                                     >  2:438692/1‑149 (MQ=255)
                                                                                             aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaata                                                    >  2:630199/1‑149 (MQ=255)
                                                                                             aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATCAAATAAATGTAAAGCtaaata                                                    >  2:1049121/1‑149 (MQ=255)
                                                                                             aCAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGGTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATTTAAAGCtaaata                                                    >  1:3236/1‑149 (MQ=255)
                                                                                               aaaaaCCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCtaaataaa                                                  >  2:1390746/1‑149 (MQ=255)
                                                                                                     cccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAATGTTTATAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATTTCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTCAATAAAAACGtt                                            <  1:1409022/149‑1 (MQ=255)
                                                                                                     cccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATGACGTGCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATACAAACGtt                                            <  1:1455727/149‑1 (MQ=255)
                                                                                                      ccAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGttt                                           <  2:1080391/149‑1 (MQ=255)
                                                                                                      ccAACTAATGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGttt                                           <  1:688355/149‑1 (MQ=255)
                                                                                                       cAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGtttt                                          >  1:216857/1‑149 (MQ=255)
                                                                                                             ctGGTAATAGTTGGGGTTTGGTAATAAAACGTTTAGAATCTGTGTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTCAACAAAATCGTTTTATCAct                                    <  2:1915900/149‑2 (MQ=255)
                                                                                                              tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGGACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                                   >  1:862047/1‑149 (MQ=255)
                                                                                                              tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                                   <  2:151604/149‑1 (MQ=255)
                                                                                                              tGGTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACct                                   <  1:552052/149‑1 (MQ=255)
                                                                                                               ggTAATAGTAGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAAGCACTAAATAAATGTAAGGCTAAATAAAAACGTTTTATTACctc                                  >  2:1016620/1‑149 (MQ=255)
                                                                                                                gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACctct                                 >  2:1490547/1‑149 (MQ=255)
                                                                                                                gTAATAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATAATATAATGAATAATATCTTAGTGCAAGCACCTACATCATTAAATAAATGTAAAGCTAACTAAAAACGTTTTATTACctct                                 >  2:1351504/1‑149 (MQ=255)
                                                                                                                    tAGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTAcc                             >  1:1575571/1‑149 (MQ=255)
                                                                                                                     aGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCa                            >  2:1854613/1‑149 (MQ=255)
                                                                                                                     aGTCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCa                            <  2:239888/149‑1 (MQ=255)
                                                                                                                      gTCGGGGTTGGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATTATTAATAATATCTTAGTACATGCACCTAAAACATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaa                           <  2:472833/149‑1 (MQ=255)
                                                                                                                       tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa                          >  1:1595533/1‑149 (MQ=255)
                                                                                                                       tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa                          >  2:1264573/1‑149 (MQ=255)
                                                                                                                       tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa                          <  1:282057/149‑1 (MQ=255)
                                                                                                                       tCGGGGTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATAGCTTAGTGCAAGCACCTAAAGCATTACATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTTCCaaa                          >  2:557910/1‑149 (MQ=255)
                                                                                                                       tCGGGGTTTGGTAATAAAACGTCCAGAAACTGTTTATTTCTCCAATTAGAAAATCTTGGATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCaaa                          <  1:942289/149‑1 (MQ=255)
                                                                                                                       tCGGGGTTTGGTAATAAAACGATTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCAATAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCACTTACCaaa                          >  2:1817734/1‑149 (MQ=255)
                                                                                                                         ggggTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACt                        <  1:831691/149‑1 (MQ=255)
                                                                                                                            gTTTGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTaaa                     <  2:1988378/149‑1 (MQ=255)
                                                                                                                             tttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTaaaa                    <  1:181905/149‑1 (MQ=255)
                                                                                                                             tttGGTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTaaaa                    <  1:1164170/149‑1 (MQ=255)
                                                                                                                                 gTAATAAAACGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATg                <  2:1686463/149‑1 (MQ=255)
                                                                                                                                      aaaaCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAag           <  1:989957/149‑1 (MQ=255)
                                                                                                                                       aaaCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAaga          >  1:1734815/1‑149 (MQ=255)
                                                                                                                                         aCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTCAAGCCGAAGAAAAACGTTTTATTACGTCTTACCAAACTAAAATATGGAAAGAgg        >  1:1960389/1‑149 (MQ=255)
                                                                                                                                         aCGTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCATAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAgg        >  1:1780489/1‑149 (MQ=255)
                                                                                                                                           gTTTAGAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGtt      >  2:1319098/1‑149 (MQ=255)
                                                                                                                                              tAGAAACTTTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGttttt   <  1:39114/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTAAAGTGCTATAATAAACTTAATATAACAAAAACCCCAACTACTGGTAATAGTCGGGGTTTGGTAATAAAACGTTTANAAACTGTTTATTTATATAATTTTCGATACTTGTATTATATAATGAATAATATCTTAGTGCAAGCACCTAAATCATTAAATAAATGTAAAGCTAAATAAAAACGTTTTATTACCTCTTACCAAACTAAAATATGGAAAGAGGTTTTTT  >  CP000731/1‑228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑