New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 213688074 (0.700)4 (0.040) 4/256 12.4 5.6% intergenic (+66/+787) ktrB_2/ypeA_1 Ktr system potassium uptake protein B/Acetyltransferase YpeA
?USA300TCH1516_ALE = 2136884 66 (0.680)intergenic (+70/+783) ktrB_2/ypeA_1 Ktr system potassium uptake protein B/Acetyltransferase YpeA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGATTAAGAAATTTTAAA  >  USA300TCH1516_ALE/2136744‑2137022
                                                                                                                                            |                                                                                                                                          
aaataAGAACAATTATACCACCAAAAATTACTAAAAATCACCGCTACACTAAAGGACAAAATTATCTATAAAATAACTAACCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAAc                                                                                                                                            <  2:338878/138‑1 (MQ=255)
  ttaAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAg                                                                                                                                          >  2:840193/1‑141 (MQ=255)
   taAGCACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGAGAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATAAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAga                                                                                                                                         >  2:734605/1‑140 (MQ=255)
      gAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAg                                                                                                                                      >  2:537320/1‑141 (MQ=255)
        aCATTTATACCACCAAAAAGTCCTCAAAATTACCGCTACACTAACGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTCTTACATTAAAAAAACTACCTAAGCAGGTAGtt                                                                                                                                    >  1:2021/1‑141 (MQ=255)
        aCATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGtt                                                                                                                                    >  2:689723/1‑141 (MQ=255)
        aCATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTACATAAGAAATGAACTAGTGTTTTAAGCGCTTAACTTCAAAAAACTACATAAACAggcattt                                                                                                                                    >  2:569732/1‑136 (MQ=255)
          aTTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGtttt                                                                                                                                  >  1:833584/1‑141 (MQ=255)
           tttATAACACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGttttt                                                                                                                                 <  2:694255/141‑1 (MQ=255)
             tataCCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGttttttt                                                                                                                               >  2:212221/1‑140 (MQ=255)
              ataCCCACAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTtttat                                                                                                                              <  1:162855/141‑1 (MQ=255)
              ataCCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTtttat                                                                                                                              >  1:619818/1‑141 (MQ=255)
              ataCCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTtttat                                                                                                                              >  2:483260/1‑141 (MQ=255)
              ataCCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTtttat                                                                                                                              >  2:342283/1‑141 (MQ=255)
               taCCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTtttatt                                                                                                                             >  1:769455/1‑141 (MQ=255)
                accaccAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTtttattt                                                                                                                            >  1:48338/1‑141 (MQ=255)
                   gccaAAAAGTCCTAAAAATTACCGCAACACGAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTCCGTAATCAGGTAGTTTTTtacttatt                                                                                                                         <  2:705189/140‑1 (MQ=255)
                    ccaAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTATACAGGTAGTCTTTTatttattt                                                                                                                        >  2:1138382/1‑141 (MQ=255)
                     caAAAAGTCCTAAAAAGTACCGCGACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTAtttt                                                                                                                       <  1:534064/141‑1 (MQ=255)
                      aaaaaGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTa                                                                                                                      >  2:1114935/1‑141 (MQ=255)
                      aaaaaGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTa                                                                                                                      >  2:533142/1‑141 (MQ=255)
                       aaaaGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAg                                                                                                                     >  1:587442/1‑141 (MQ=255)
                        aaaGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAgg                                                                                                                    <  1:160058/141‑1 (MQ=255)
                          aGTCCTAAAAATTACCGCTACACTAAAGCACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGcc                                                                                                                  >  1:762203/1‑141 (MQ=255)
                            tCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGa                                                                                                                >  1:511615/1‑141 (MQ=255)
                            tCCTAAAAATTACCGCTACAATCATGGACGAATTTATGGATAAAATAACTATCCATATTTAATAAGAAATGAACAAGTGTCTTAATCTATTACATTAAAAAACCTACATAAACAGGTAGTTTTTTATTTATTTTGTGCCGa                                                                                                                >  2:259321/1‑141 (MQ=255)
                              cTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGact                                                                                                              >  2:858976/1‑139 (MQ=255)
                               tAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAAAAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTa                                                                                                             <  1:1041726/141‑1 (MQ=255)
                                  aaaTTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAat                                                                                                          <  1:128690/141‑1 (MQ=255)
                                        ccGCTACACTAAAGGACAAATGTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAGACTACCAATACAGGTAGGTTTTTATTTATTTTAGGCCGATTAAatgtctta                                                                                                    <  2:198584/141‑1 (MQ=255)
                                                cTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCtttt                                                                                            >  1:679984/1‑140 (MQ=255)
                                                   aaGGACAAATTTATCTATAAAATAACTCTCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTGAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTACATCTCTTATGTCTttaatt                                                                                         >  2:552081/1‑141 (MQ=255)
                                                       aCAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTATTAGTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGt                                                                                     <  1:1138419/141‑1 (MQ=255)
                                                       aCAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTCTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGt                                                                                     <  1:1138382/141‑1 (MQ=255)
                                                           aTTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTaaaa                                                                                 <  2:769455/141‑1 (MQ=255)
                                                            tttATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAAt                                                                                >  1:208438/1‑141 (MQ=255)
                                                               aTCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGca                                                                             >  2:949498/1‑141 (MQ=255)
                                                               aTCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTCTTTAACTGACATCAGTCCGATGAAAGGTCTTATGTCTTTAATTAAGTAAAATGca                                                                             >  2:543874/1‑141 (MQ=255)
                                                                tCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATTcac                                                                            <  2:405908/141‑1 (MQ=255)
                                                                tCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGcac                                                                            <  1:840193/141‑1 (MQ=255)
                                                                  tataAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACaa                                                                          <  2:1064547/141‑1 (MQ=255)
                                                                           aCTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCtt                                                                 >  2:59376/1‑141 (MQ=255)
                                                                            cTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCttt                                                                <  1:398381/141‑1 (MQ=255)
                                                                            cTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCAATTACATGTCTTATGTCTTTAATTAAGTCAAATGCGCAAGTACACGttt                                                                >  2:1208600/1‑141 (MQ=255)
                                                                               tCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTaaa                                                             <  2:983667/141‑1 (MQ=255)
                                                                                 cATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTaaaaa                                                           >  1:679025/1‑141 (MQ=255)
                                                                                 cATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGACGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTaaaaa                                                           >  1:889571/1‑141 (MQ=255)
                                                                                    cTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGAt                                                        >  2:216666/1‑141 (MQ=255)
                                                                                     tttAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACCCCTTTAAAAAGAtt                                                       <  2:1108646/141‑1 (MQ=255)
                                                                                         ataaGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACt                                                   >  1:394617/1‑141 (MQ=255)
                                                                                          taaGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTc                                                  <  1:922147/141‑1 (MQ=255)
                                                                                          taaGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTc                                                  <  1:499629/141‑1 (MQ=255)
                                                                                          taaGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTc                                                  <  1:537320/141‑1 (MQ=255)
                                                                                           aaGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCa                                                 >  1:974748/1‑141 (MQ=255)
                                                                                            aGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCaa                                                >  1:417819/1‑141 (MQ=255)
                                                                                            aGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCaa                                                >  1:673646/1‑141 (MQ=255)
                                                                                                 tGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCCCAAGTACACCTTTAAAAAGATTTACTCAaaacta                                           >  1:262345/1‑141 (MQ=255)
                                                                                                   aaCTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAaaactaaa                                         >  1:95047/1‑141 (MQ=255)
                                                                                                     cTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAaaactaaact                                       <  1:279794/141‑1 (MQ=255)
                                                                                                     cTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAaaactaaact                                       >  1:545108/1‑141 (MQ=255)
                                                                                                     cTAGTGTTTTAATCTATTACAGTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAaaactaaact                                       <  1:555766/141‑1 (MQ=255)
                                                                                                         tgtTTTAATCTATTGCATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATAc                                   >  1:661608/1‑141 (MQ=255)
                                                                                                           ttttAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACAAAACTATACCt                                 >  2:679042/1‑141 (MQ=255)
                                                                                                                aTCTATTACATTAAAAAAGCTACCTAAGCAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTa                            <  2:1137005/141‑1 (MQ=255)
                                                                                                                 tCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTACGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTaa                           >  2:864860/1‑141 (MQ=255)
                                                                                                                 tCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAAATAAACTATAACTAGTTaa                           >  1:285446/1‑141 (MQ=255)
                                                                                                                  cTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAAc                          <  2:48338/141‑1 (MQ=255)
                                                                                                                      tACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCt                      <  1:977953/141‑1 (MQ=255)
                                                                                                                        cATTAAAAAAACTACCTAAACAGTTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTTAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTtg                    <  1:533142/141‑1 (MQ=255)
                                                                                                                             aaaaaaCTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGAtt               >  1:347821/1‑141 (MQ=255)
                                                                                                                             aaaaaaCTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGAtt               >  1:347744/1‑141 (MQ=255)
                                                                                                                              aaaaaCTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACAATACCTAGTTCACCGCTTGTGATTa              >  2:279706/1‑141 (MQ=255)
                                                                                                                                 aaCTACCTAAACAGGTAGTTTATTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAGGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGATTAAGa           >  2:825153/1‑141 (MQ=255)
                                                                                                                                     aCCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCATAACTAAACTATACCTAGTTAACCGCTTGTGATTAAAAAAtt       >  2:1096796/1‑141 (MQ=255)
                                                                                                                                        tAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGATTAAGAAATTTTa    >  2:1133745/1‑141 (MQ=255)
                                                                                                                                          aaCAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGATTAAGAAATTTTaaa  <  2:619818/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                          
TATTAAGAACATTTATACCACCAAAAAGTCCTAAAAATTACCGCTACACTAAAGGACAAATTTATCTATAAAATAACTATCCATCTTTAATAAGAAATGAACTAGTGTTTTAATCTATTACATTAAAAAAACTACCTAAACAGGTAGTTTTTTATTTATTTTAGGCCGATTAAATGTCTTATGTCTTTAATTAAGTAAAATGCACAAGTACACCTTTAAAAAGATTTACTCAAAACTAAACTATACCTAGTTAACCGCTTGTGATTAAGAAATTTTAAA  >  USA300TCH1516_ALE/2136744‑2137022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.