Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
JC | USA300TCH1516_ALE | 2,014,512 | +TAAAG | 26.4% | coding (686/837 nt) | USA300HOU_RS10150 ← | hypothetical protein |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 2014512 | 14 (0.500) | 5 (0.170) +TAAAG |
5/230 | NT | 26.4% | coding (686/837 nt) | USA300HOU_RS10150 | hypothetical protein |
? | USA300TCH1516_ALE | 2014513 = | 14 (0.460) | coding (685/837 nt) | USA300HOU_RS10150 | hypothetical protein |
CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2014384‑2014512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA > USA300TCH1516_ALE/2014513‑2014626 ||||| CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGT < 2:52160/140‑1 ATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATCAAATCAGACGTGAACCGTGCTAATACGAACTTAACCGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTT > 2:342512/1‑140 GTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGAAAGATGTTGCTATACCATTAACAAT > 2:74449/1‑140 CGAAATTTACTGCAGCTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTA > 2:152286/1‑140 CTATTAAACATAAGAATAAAATAAAGTAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA < 1:342512/140‑1 ||||| CTGTACTATCATTTGAAACATCCTGTTGATTATCAGTTTGTGTCACTTTAGATGTTTTATTATAAATTGCGTGTGTCGTATACCTTGCTAATACGAAATTTACTGCAGCTATTAAACATAAGAATAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2014384‑2014512 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAAGTAAAAATGATATGGAATGTTTTCCATACTTGATATACCAAATATGATAGATTGTGCTATACCATTAACAATGTAATACATTGGATTTAGCATTAGGATGTGATTGATAA > USA300TCH1516_ALE/2014513‑2014626 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |