New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 1205323 | 93 (0.820) | 44 (0.530) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG |
10/200 | 11.3 | 39.5% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
? | USA300TCH1516_ALE | = 1443739 | NA (NA) | intergenic (‑312/+41) | USA300TCH1516_01342/brnQ_3 | hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein | |||||
Rejected: Coverage evenness skew score above cutoff. |
AGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAA > USA300TCH1516_ALE/1443621‑1443879 | aGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCaa < 2:547560/141‑1 (MQ=11) gTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAAc > 1:689666/1‑141 (MQ=31) tCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAAcc > 3:278127/1‑141 (MQ=32) tCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAAcc < 1:167818/141‑1 (MQ=32) cGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACct < 4:323096/141‑1 (MQ=32) gACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCttt < 2:838190/141‑1 (MQ=35) aCCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCtttt < 1:114642/141‑1 (MQ=35) cGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTtat < 1:691754/141‑1 (MQ=35) gAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTtata > 1:114285/1‑141 (MQ=35) gAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTtata > 3:268065/1‑141 (MQ=35) ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtatt > 2:117092/1‑141 (MQ=37) gCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTTGTTATTTATGTCCCAACCTCTTTTAtatta > 2:394177/1‑141 (MQ=255) gCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtatta > 4:324256/1‑141 (MQ=38) gCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTAtatta > 3:210661/1‑141 (MQ=35) gagaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTc < 2:767678/141‑1 (MQ=39) agaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGAATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCCTTTATATTATTCg > 4:48051/1‑141 (MQ=255) gaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGt < 1:667941/141‑1 (MQ=255) gaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGt < 2:860543/141‑1 (MQ=255) gaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGt < 3:132464/141‑1 (MQ=255) aCGGCAGCCTAGGAGAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt < 2:449954/141‑1 (MQ=255) cccTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCt < 1:10080/141‑1 (MQ=255) ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGa < 1:206731/141‑1 (MQ=255) gCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAttt > 1:491112/1‑141 (MQ=255) gCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAttt > 1:332383/1‑141 (MQ=255) gCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATAttt > 1:632322/1‑141 (MQ=255) gAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTaa < 3:309987/141‑1 (MQ=255) aaGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAAt > 1:151510/1‑141 (MQ=255) cATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGa > 3:39218/1‑141 (MQ=255) tCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCt < 2:152593/141‑1 (MQ=255) cAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTTAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCtt < 1:215325/141‑1 (MQ=255) aaTACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGTGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTg < 3:175543/141‑1 (MQ=255) aCGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTCATTGGATCTTGttt > 4:161806/1‑141 (MQ=255) gAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTa > 4:350854/1‑141 (MQ=255) aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTGTTGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGttt > 1:181242/1‑141 (MQ=255) aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTAc < 1:313838/141‑1 (MQ=255) aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTAc > 3:17231/1‑141 (MQ=255) aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTAc < 1:514077/141‑1 (MQ=255) tATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTTGATCTTGTTTTACaaa > 4:89751/1‑141 (MQ=255) aTTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAat < 4:149320/141‑1 (MQ=255) ttGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt < 3:39896/102‑1 (MQ=255) ttGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGtt > 4:39896/1‑102 (MQ=255) tGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTataatgtt > 1:159291/1‑134 (MQ=255) tataAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACATATATGc > 2:31910/1‑141 (MQ=255) ataAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGcc > 4:230563/1‑141 (MQ=255) taAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCg < 1:571135/141‑1 (MQ=255) aaaTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGa < 2:192387/141‑1 (MQ=255) aaTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTGTTTAGGGATGTATGTCCCAACCTCGGTTATATTATTCGTTATTCCTGTTGATAGTTAATTGGATCTTGTTTTACAAATATGCCGAc > 3:314501/1‑141 (MQ=25) aTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTTTTTTTTTATTTTCAAACATCTTTTCTATTATTTGTTATTCTTGTTTAGATTTAATTGTATCTTGTTTTCCAAatatttcgaat > 2:641368/1‑134 (MQ=12) gagaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGa < 1:729253/141‑1 (MQ=255) agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGTGTTTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGAt > 2:456705/1‑141 (MQ=255) agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGAt > 3:65688/1‑141 (MQ=255) aaCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAg < 1:380906/141‑1 (MQ=255) aCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGc > 3:71287/1‑141 (MQ=255) agTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGTTTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAat > 4:138175/1‑141 (MQ=255) tatTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTGTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTg < 1:526675/141‑1 (MQ=255) atTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGc > 2:755331/1‑141 (MQ=255) tttCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaa < 4:39218/141‑1 (MQ=255) ttCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGCTTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaat > 1:83647/1‑141 (MQ=255) ttCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaat > 1:83453/1‑141 (MQ=255) tCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaata < 1:395530/141‑1 (MQ=255) tAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCTAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataat < 2:154502/141‑1 (MQ=255) tAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCaataat < 4:185013/141‑1 (MQ=255) tGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCt < 2:357541/141‑1 (MQ=255) aaaaTTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTAc > 2:553335/1‑141 (MQ=255) aTTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTgg < 3:287851/141‑1 (MQ=255) aTTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTgg < 2:223903/141‑1 (MQ=255) cTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAcc > 1:697220/1‑141 (MQ=255) cTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAAcc < 2:319839/141‑1 (MQ=255) tgc‑‑‑tgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCActct > 2:300494/1‑141 (MQ=255) c‑‑‑tgTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTaa < 2:629511/141‑1 (MQ=255) tttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGa < 3:316502/141‑1 (MQ=255) tttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGa < 1:553335/141‑1 (MQ=255) ttttttAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGaa > 1:765129/1‑141 (MQ=255) | AGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGC‑‑‑TGTTTTTTTAGGGATTTATGTCCCAACCTCTTTTATATTATTCGTTATTCCTGTTGATATTTAATTGGATCTTGTTTTACAAATATGCCGACTAGATAGCCTAATATCGTTGCAATAATTGCTACTGGGAACCACTCTAAAGAA > USA300TCH1516_ALE/1443621‑1443879 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |