BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1205323	93 (0.820)	44 (0.530) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	10/200	11.3	38.5%	intergenic (‑204/‑365)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
*	?	USA300TCH1516_ALE	= 2072043	101 (0.890)	44 (0.530) +AGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAG	10/200	11.3	38.5%	intergenic (+538/+35)	USA300HOU_RS10445/USA300HOU_RS10450	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 101 total aligned reads displayed.

ACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTACACCAACACCA  >  USA300TCH1516_ALE/2071905‑2072183

aCTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑tttt                                                                                                                                            <  1:41775/141‑1 (MQ=32)

 cggcTGCGGGAGCAGCGCCAGTCGAAGACCAAGGCTGAGGCGGAACCCTAGGAAGGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGTACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑ttttt                                                                                                                                           <  2:271441/138‑1 (MQ=11)

 cTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCCGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑ttttt                                                                                                                                           >  1:447915/1‑141 (MQ=17)

 cTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑ttttt                                                                                                                                           >  3:281607/1‑141 (MQ=32)

     tGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAgg                                                                                                                                       <  2:207233/141‑1 (MQ=32)

      gAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAggg                                                                                                                                      >  1:443412/1‑141 (MQ=32)

           aGCAGTGCCAGTCGAAGAGCAAGGCTGAGACGGCACACTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGAAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TATGTTAGGGAGTTa                                                                                                                                 >  1:809121/1‑141 (MQ=11)

           aGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTa                                                                                                                                 >  1:178869/1‑141 (MQ=32)

           aGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTa                                                                                                                                 >  1:702938/1‑141 (MQ=32)

           aGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCGAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTa                                                                                                                                 <  2:525577/141‑1 (MQ=17)

            gCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTAt                                                                                                                                <  4:329445/141‑1 (MQ=32)

             cAGTGCCAGTCGAAGACCAAGGCTGAGCCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTGTTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTTTg                                                                                                                               >  1:117558/1‑141 (MQ=12)

             cAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATg                                                                                                                               <  3:129015/141‑1 (MQ=32)

              aGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGt                                                                                                                              <  1:680349/141‑1 (MQ=32)

                    aGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGc                                                                                                                        <  1:31474/141‑1 (MQ=32)

                      tCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCct                                                                                                                      <  1:105076/141‑1 (MQ=32)

                      tCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCct                                                                                                                      <  2:508738/141‑1 (MQ=32)

                        gAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCctct                                                                                                                    >  1:238810/1‑141 (MQ=32)

                           gACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTaaa                                                                                                                 >  2:659866/1‑141 (MQ=35)

                           gACCAAGGCTGAGACGGCACCCTAGGAAAGCGAACCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTaaa                                                                                                                 <  1:807328/141‑1 (MQ=25)

                            aCCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAAt                                                                                                                >  3:17715/1‑141 (MQ=35)

                              cAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGt                                                                                                              >  3:179726/1‑141 (MQ=35)

                                 ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGttat                                                                                                           >  2:96958/1‑141 (MQ=37)

                                 ggCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGttat                                                                                                           >  3:312000/1‑141 (MQ=37)

                                  gCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGttatt                                                                                                          >  1:271016/1‑141 (MQ=38)

                                    tGAGACGGCACCCTCGGAAAGCGACGCCATTCAATCCGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATCTATGTCACAGCCTCTAAATGTTATTAg                                                                                                        >  2:79995/1‑141 (MQ=14)

                                    tGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAg                                                                                                        >  1:696223/1‑141 (MQ=39)

                                    tGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAg                                                                                                        <  2:238810/141‑1 (MQ=39)

                                       gaCGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTa                                                                                                     >  1:867971/1‑141 (MQ=255)

                                           gCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAtttt                                                                                                 <  4:309175/141‑1 (MQ=255)

                                            cacaCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTAttttt                                                                                                <  4:103402/141‑1 (MQ=255)

                                             aCCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTa                                                                                               >  2:590092/1‑141 (MQ=255)

                                                   ggAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCa                                                                                         >  3:220171/1‑141 (MQ=255)

                                                         cGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCa                                                                                   >  3:146317/1‑141 (MQ=255)

                                                           aaGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGa                                                                                 <  4:145486/141‑1 (MQ=255)

                                                            aGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGaa                                                                                <  1:536098/141‑1 (MQ=255)

                                                             gCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGaaa                                                                               >  2:549943/1‑141 (MQ=255)

                                                             gCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGaaa                                                                               >  4:130684/1‑141 (MQ=255)

                                                             gCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGaaa                                                                               >  1:331385/1‑141 (MQ=255)

                                                                    aaTACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTATTTAGGGTTTTACGTCCCAGCCTCTAAATGAAATTAGTTATTTTTACTTTCAATATCAACaataatatt                                                                        >  4:46397/1‑138 (MQ=17)

                                                                      tACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCtt                                                                      <  4:2428/141‑1 (MQ=255)

                                                                         gAATTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAg                                                                   <  2:519108/141‑1 (MQ=255)

                                                                         gAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAg                                                                   <  2:152236/141‑1 (MQ=255)

                                                                         gAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAg                                                                   <  1:536606/141‑1 (MQ=255)

                                                                          aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGt                                                                  <  2:298134/141‑1 (MQ=255)

                                                                          aaGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGt                                                                  <  1:66024/141‑1 (MQ=255)

                                                                             tATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTCTCTTACTGATG‑TTTTTTAGGGATTTATGTACCAGCCTCTACATGTTATTAGTTCTTTTTACTTTCAATATCAGAAATAATTTCTTTAGtttt                                                               <  1:564953/141‑1 (MQ=21)

                                                                             tATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGtttt                                                               >  2:94021/1‑141 (MQ=255)

                                                                             tATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGtttt                                                               >  1:178176/1‑141 (MQ=255)

                                                                                tGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttct                                                            >  2:431927/1‑141 (MQ=255)

                                                                                tGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttct                                                            <  2:572184/141‑1 (MQ=255)

                                                                                 gTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttctt                                                           <  1:612389/141‑1 (MQ=255)

                                                                                  tataAAGAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGTATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttcttt                                                          <  2:23324/141‑1 (MQ=255)

                                                                                   ataAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTtttctttc                                                         <  1:556082/141‑1 (MQ=255)

                                                                                     aaaTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCaa                                                       >  1:815861/1‑141 (MQ=255)

                                                                                      aaTAGAGAACAGCAGTAAGATATTTTCTAATTGAACATTATTTTACTGCCG‑TTTTTTCGGGACTTATGTCCCAGCCTCTACATGTTGTTAGTTATTTTTACTTTCAACATCAGAAGTAATTTCGTTAGTTtttctatctct                                                      >  2:567497/1‑138 (MQ=18)

                                                                                       aTAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAata                                                     <  4:151851/141‑1 (MQ=255)

                                                                                         agagAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATc                                                   <  1:442616/141‑1 (MQ=255)

                                                                                           agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCtt                                                 >  1:84287/1‑141 (MQ=255)

                                                                                           agaACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCtt                                                 >  1:712210/1‑141 (MQ=255)

                                                                                              aCAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCaa                                              >  2:335794/1‑141 (MQ=255)

                                                                                               cagcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTc                                                <  1:248416/138‑1 (MQ=255)

                                                                                               cagcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTc                                                >  2:248416/1‑138 (MQ=255)

                                                                                                agcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTTACAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCaaaa                                            >  4:173047/1‑141 (MQ=255)

                                                                                                 gcagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAAt                                           <  4:181315/141‑1 (MQ=255)

                                                                                                  cagTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATc                                          >  1:729178/1‑141 (MQ=255)

                                                                                                   agTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCGTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCt                                         <  2:462441/141‑1 (MQ=255)

                                                                                                     tAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCttt                                       <  2:443412/141‑1 (MQ=255)

                                                                                                     tAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCttt                                       <  2:863146/141‑1 (MQ=255)

                                                                                                         taatTTTC‑AATTAGAAAATATCTTACTGCTG‑TTTTTTAGGGGTTTATGTCCCAGCCTCTAAACGATATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCGTTAGATTTTCTTTCCATATCTTCAAAATCTTTTTTaa                                  >  2:403980/3‑141 (MQ=37)

                                                                                                          tatTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTGTCAATATCTTCAAAATCTTTTTTaa                                  <  2:4169/141‑1 (MQ=255)

                                                                                                           atTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTaaa                                 >  3:366846/1‑141 (MQ=255)

                                                                                                              ttCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGat                              >  1:700141/1‑141 (MQ=255)

                                                                                                              ttCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATATTCAAAATCTTTTTTAAAGat                              >  3:282098/1‑141 (MQ=255)

                                                                                                              ttCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCACAGCCTCTAGATGTTATAAGATATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTCAAGat                              <  1:302385/141‑1 (MQ=37)

                                                                                                              ttCTAATTGAAAATTATCTTACTGCTG‑TTTTTGAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTGCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGat                              <  2:230693/141‑1 (MQ=255)

                                                                                                                cTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGatat                            <  3:195342/141‑1 (MQ=255)

                                                                                                                 tAATTGAGATTTAGCTTATTGCTT‑TTTTTTAGGGATTTATGTCCCATCCTCTAAATGTTATTAGTTAGTTTTACTTGCAATAGCAGAAATTATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGAtata                           <  2:693162/141‑1 (MQ=38)

                                                                                                                 tAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGAtata                           <  3:10104/141‑1 (MQ=255)

                                                                                                                  aaTTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATaa                          <  1:630487/141‑1 (MQ=255)

                                                                                                                  aaTTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATaa                          >  1:662574/1‑141 (MQ=255)

                                                                                                                   aTTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAg                         <  4:179726/141‑1 (MQ=255)

                                                                                                                   aTTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAg                         <  3:30350/141‑1 (MQ=255)

                                                                                                                   aTTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAg                         <  1:181318/141‑1 (MQ=255)

                                                                                                                   aTTGAAAAGTATCTTGCGGCTG‑GTATTTAGGAATATATGTCTGGGCCTCTAAAGGTTAGTAGTTATTTTTAGTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAg                         <  3:260087/141‑1 (MQ=255)

                                                                                                                    ttGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGc                        <  1:725733/141‑1 (MQ=255)

                                                                                                                    ttGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGc                        <  2:667492/141‑1 (MQ=255)

                                                                                                                     tGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCa                       <  2:366426/141‑1 (MQ=255)

                                                                                                                     tGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCa                       >  1:443720/1‑141 (MQ=255)

                                                                                                                      gAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTTAATGTTATTATTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCaa                      <  1:79995/141‑1 (MQ=255)

                                                                                                                        aaaTTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAAt                    >  4:122536/1‑141 (MQ=255)

                                                                                                                        aaaTTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAAt                    <  2:273179/141‑1 (MQ=255)

                                                                                                                          aTTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGc                  <  2:84287/141‑1 (MQ=255)

                                                                                                                                ttACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCtactac            <  4:233419/141‑1 (MQ=255)

                                                                                                                                    tgctgtTTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTacacc         >  4:48139/1‑141 (MQ=255)

                                                                                                                                       tg‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTacaccaaca     <  4:258516/141‑1 (MQ=255)

                                                                                                                                       tg‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTCTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTacaccaaca     >  2:308181/1‑141 (MQ=255)

                                                                                                                                        g‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTacaccaacac    >  1:496303/1‑141 (MQ=255)

                                                                                                                                           tttttAGGGCTTTATGTGCCAGCCTATAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAACATCTTCCAAATCTTTTTTAAAGATATCAGCAAATGCTACTacaccaacaaaa  <  4:17715/141‑4 (MQ=255)

                                                                                                                                           tttttAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTacaccaacacca  <  2:178869/141‑1 (MQ=255)

ACTCCTGAGGGAGCAGTGCCAGTCGAAGACCAAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATATTTTCTAATTGAAAATTATCTTACTGCTG‑TTTTTTAGGGATTTATGTCCCAGCCTCTAAATGTTATTAGTTATTTTTACTTTCAATATCAGAAATAATTTCTTTAGTTTTTCTTTCAATATCTTCAAAATCTTTTTTAAAGATATAAGCAAATGCTACTACACCAACACCA  >  USA300TCH1516_ALE/2071905‑2072183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.