Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000731	1274	1371	98	2 [1]	[1] 2	repA/USA300HOU_pUSA300HOUMR0003	replication protein A/hypothetical protein

CAATTCTAACTGAACTTGAAGAAACACATGCCCTTTATATGCGCCGTAAAAACATGAAACAATATAATATCTTTAATCAATAATTCAAATGATTTTATAACACTCGAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTGTAAGTGATTTAGA  >  CP000731/1133‑1323                                                                                                                                             |                                                   cAATTCTAACTGAACTTGAAGAAACACATGCCCTTTATATGCGCCGTAAAAACATGAAACAATATAATATCTTTAATCAATAATTCAAATGATTTTATAACACTCGAAGAGACATCAAAATATTCCGTTAAATCATCTGAc                                                    <  3:225529/141‑1 (MQ=255)                                                   aaCATGAAACAATATAATATATAAAAACAATAATTCAAATGAAATTATAACACTCGAAGAGACATCAAAATATACCGTTAAATCATCTGACTTTTTAATAAAAAAAAAAAAAAAAAGTCAAGAAATTGTAAGTGATTTAGa  <  2:220266/141‑1 (MQ=19)                                                                                                                                             |                                                   CAATTCTAACTGAACTTGAAGAAACACATGCCCTTTATATGCGCCGTAAAAACATGAAACAATATAATATCTTTAATCAATAATTCAAATGATTTTATAACACTCGAAGAGACATCAAAATATTCCGTTAAATCATCTGACTTTTTAACTGATGACGACGAAAAAAATCAAGAAATTGTAAGTGATTTAGA  >  CP000731/1133‑1323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑