Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | USA300TCH1516_ALE | 522,999 | A→G | 14.5% | M11V (ATG→GTG) | yabA → | Initiation‑control protein YabA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 522,999 | 0 | A | G | 14.5% | 64.7 / 2.8 | 27 | M11V (ATG→GTG) | yabA | Initiation‑control protein YabA |
Reads supporting (aligned to +/- strand): ref base A (14/9); new base G (2/2); total (16/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATATATTAGACATTTCTATGCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAACCA > USA300TCH1516_ALE/522864‑523139 | atatatTAGACATTTCTATGCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGt > 1:244117/1‑141 (MQ=255) aatTACACATTTCTATGCAGGTGAAGCGTGAGGGACATGAACAGCCACGTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAAGAATTATTACATTTGGATCGCCATGAAATATTTGAAAAAATAATGCGTTTa < 2:75612/140‑1 (MQ=255) ttCTATGCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAGTGCGTTTAGAaatgaatg > 2:202352/1‑141 (MQ=255) ttCTATGCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAGTGAGTTTAGAaaggaaag > 2:270772/1‑139 (MQ=255) tATGCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAGTGtca > 2:152402/1‑141 (MQ=255) gCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGtcaatc < 2:164474/141‑1 (MQ=255) cAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGtcaatca > 1:14364/1‑141 (MQ=255) cTTAAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCaaa < 2:104125/141‑1 (MQ=255) aGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGaa < 1:115794/141‑1 (MQ=255) aCATGAACAGCCACTTGAATAAAAAATAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACtt < 1:79971/141‑1 (MQ=255) aCATGAACAGCCAATTGAATATAAATTAGAAGAAATAGAAATTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACtt < 1:283477/141‑1 (MQ=255) cAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAAAAATGAATGTCAATCAACATTAAAACGAAACTGCAGCAtt > 2:263470/1‑141 (MQ=255) cACTTGAATATAAATAAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAGAGGAAACTTCAGAATTAAAg > 1:210057/1‑141 (MQ=255) agaagaAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAAt > 1:142074/1‑141 (MQ=255) aTGCATTCAGGAGGCATTATTACATATGGATCGCAATGAAATATTTGAAAAAATAATGAGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGAAGTTGAATTAGTAGAAGAAAATGt > 2:140492/1‑141 (MQ=255) aggCATGATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATCAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCATTTGAATTAGTAGAAGAAAATGTAGCGCTTCAAc < 2:55115/141‑1 (MQ=255) ttattaCATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGaa > 1:222470/1‑141 (MQ=255) ttattaCATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGaa > 1:206862/1‑141 (MQ=255) tttGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATaa > 1:156750/1‑141 (MQ=255) ttGGAGCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAAt < 1:28558/141‑1 (MQ=255) tGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGgt > 2:108244/1‑141 (MQ=255) aaTATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGtt > 1:177484/1‑141 (MQ=255) aaTATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGtt > 2:20955/1‑141 (MQ=255) atTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAACTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTggg < 1:171532/141‑1 (MQ=255) aaaTAGTGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAatgatg < 1:270772/141‑1 (MQ=255) aaaTAGTGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAatgatg < 1:202352/141‑1 (MQ=255) aaaTAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAatgatg > 1:76945/1‑141 (MQ=255) taatGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAAc > 2:89061/1‑141 (MQ=255) aatGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAAcc < 2:142074/141‑1 (MQ=255) atGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAACCa > 2:204551/1‑141 (MQ=255) atGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAACCa > 1:6518/1‑141 (MQ=255) | ATATATTAGACATTTCTATGCAGGTGAAGCTTGAGGGACATGAACAGCCACTTGAATATAAATTAGAAGAAATAGAAACTATGCATTAAGGAGGCATTATTACATTTGGATCGCAATGAAATATTTGAAAAAATAATGCGTTTAGAAATGAATGTCAATCAACTTTCAAAGGAAACTTCAGAATTAAAGGCACTTGCAGTTGAATTAGTAGAAGAAAATGTAGCGCTTCAACTTGAAAATGATAATTTGAAAAAGGTGTTGGGCAATGATGAACCA > USA300TCH1516_ALE/522864‑523139 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |