New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 895785 =122 (0.720)12 (0.080) 5/262 12.4 8.6% coding (806/822 nt) metQ_2 Methionine‑binding lipoprotein MetQ
?USA300TCH1516_ALE = 909740 146 (0.970)intergenic (‑663/‑371) USA300HOU_RS04500/csbD_1 hypothetical protein/Stress response protein CsbD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 166 total aligned reads displayed.

AGGAGTGTGGTTGTTTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCATTTAT  >  USA300TCH1516_ALE/909593‑909888
                                                                                                                                                   |                                                                                                                                                    
aGGAGTGTGGTTGTTTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAat                                                                                                                                                     <  1:668113/149‑1 (MQ=255)
   gggttgGTTTTTTTCAAGAGCAAAAAAATTGCATCATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAattat                                                                                                                                                  <  1:1139003/145‑1 (MQ=255)
    gtgtGGTTGTTTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGATATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAattatt                                                                                                                                                 >  2:1112171/1‑149 (MQ=255)
       tgGTTGTTTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCt                                                                                                                                              <  2:80313/149‑1 (MQ=255)
        ggTTGTTTTGAAGGGGAAAAAAAGGGCTGAATTTGGAAACAAAGGGCAAGGGTACGAATAATTAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTTATTGCCCTTGAACTTCCTTGATACTCTGGCTAATTATTCCTg                                                                                                                                             <  2:1162903/149‑1 (MQ=255)
        ggTTGTTTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGTTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGTTTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTg                                                                                                                                             <  2:1136367/149‑1 (MQ=255)
        ggTTGTTATCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTg                                                                                                                                             <  2:1444177/149‑1 (MQ=255)
           tgttTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCta                                                                                                                                          <  2:313310/149‑1 (MQ=255)
                 cAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATCATCTGGCTAATTATTCCTGCtaaataaa                                                                                                                                    <  2:1300585/149‑1 (MQ=255)
                 cAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCGTGAACTTCCTGGATAATCTGGCTAATTATTCCTGCtaaataaa                                                                                                                                    <  2:918711/149‑1 (MQ=255)
                 aaaGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCtaaataaa                                                                                                                                    <  2:507699/148‑1 (MQ=255)
                  aaGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTGGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCAGGCTAATTATTCCTGCTaaataaat                                                                                                                                   >  2:1401180/1‑149 (MQ=255)
                     ggCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCat                                                                                                                                >  2:1013083/1‑149 (MQ=255)
                      gCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCata                                                                                                                               >  1:532118/1‑149 (MQ=255)
                      gCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAACAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCata                                                                                                                               <  1:25177/149‑1 (MQ=255)
                         aaaaaaGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATGATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTa                                                                                                                            >  1:1091587/1‑149 (MQ=255)
                         aaaaaaGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTa                                                                                                                            <  1:1077937/149‑1 (MQ=255)
                             aaGGGCATAATTTTGAAACAAAGGGCAAGGATATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATgg                                                                                                                        >  2:1255386/1‑149 (MQ=255)
                                 gCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAACTATTCCTGCTAAATAAATCATATTAATGGCTCa                                                                                                                    <  2:1688415/149‑1 (MQ=255)
                                    tAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTa                                                                                                                 <  2:989802/149‑1 (MQ=255)
                                      aTTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAAc                                                                                                               >  1:615485/1‑149 (MQ=255)
                                            aaaCAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATg                                                                                                         >  1:1539601/1‑149 (MQ=255)
                                            aaaCAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATg                                                                                                         >  1:547273/1‑149 (MQ=255)
                                                aaaGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGc                                                                                                     <  1:1003870/149‑1 (MQ=255)
                                                aaaGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGc                                                                                                     <  1:1448920/149‑1 (MQ=255)
                                                         tggTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCtttt                                                                                            <  1:1580633/148‑1 (MQ=255)
                                                         ggttATTAAGAATAAATTATCTTTAAAATTTTATAAATGCATATATAACAATGTTTTGATTGTCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCtttt                                                                                            <  2:669959/146‑1 (MQ=255)
                                                          ggTATGAATATTAAATTATCTTTAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCttttt                                                                                           <  2:236838/149‑1 (MQ=255)
                                                          ggTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTTACGTGATGTTGCTGGGCttttt                                                                                           <  2:1165684/149‑1 (MQ=255)
                                                            tATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCCGTAACGTGATGTTGCTGGGCTTtttaa                                                                                         <  1:918614/149‑1 (MQ=255)
                                                             aTGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACGTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTtttaat                                                                                        >  2:364273/1‑149 (MQ=255)
                                                              tGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTtttaatt                                                                                       <  2:532118/149‑1 (MQ=255)
                                                               gAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTtttaattt                                                                                      <  1:1705978/149‑1 (MQ=255)
                                                                aataatAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTtttaattta                                                                                     >  2:466814/1‑149 (MQ=255)
                                                                    ataaATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACa                                                                                 <  1:248438/149‑1 (MQ=255)
                                                                     taaATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAg                                                                                <  2:1091587/149‑1 (MQ=255)
                                                                     taaATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGGTGCTGGGCTTTTTAATTTAAACAg                                                                                <  2:289763/149‑1 (MQ=255)
                                                                     taaATTAACTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAg                                                                                <  2:1425107/149‑1 (MQ=255)
                                                                      aaaTTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAgg                                                                               >  1:736786/1‑149 (MQ=255)
                                                                      aaaTTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAgg                                                                               >  1:868886/1‑149 (MQ=255)
                                                                       aaTTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGt                                                                              >  1:1370581/1‑149 (MQ=255)
                                                                        aTTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTACTTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTCGGGTTTTTCATTTAAACACGtt                                                                             >  2:1608098/1‑148 (MQ=255)
                                                                         ttATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTAt                                                                            <  2:1314550/149‑1 (MQ=255)
                                                                         ttATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTAt                                                                            <  2:1416309/149‑1 (MQ=255)
                                                                         ttATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAACGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTAt                                                                            <  1:1106807/149‑1 (MQ=255)
                                                                          tATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTAtt                                                                           <  1:1653181/149‑1 (MQ=255)
                                                                          tATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCATGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTAtt                                                                           >  1:1142724/1‑149 (MQ=255)
                                                                                gAAAATTTTATCAATGCATATATAACAATGTTTTGAGTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCGGGGCTTTTTAATTTAAACAGGTATTTATATg                                                                     <  2:403166/149‑1 (MQ=255)
                                                                                 aaaaTTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGa                                                                    >  1:639191/1‑149 (MQ=255)
                                                                                  aaaTTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGat                                                                   >  1:1659978/1‑149 (MQ=255)
                                                                                  aaaTTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGat                                                                   <  2:581984/149‑1 (MQ=255)
                                                                                    aTTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGATAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTCATTTAAACAGGTATTTATGTGatat                                                                 >  2:419890/1‑149 (MQ=255)
                                                                                       ttATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTa                                                              >  2:1307444/1‑149 (MQ=255)
                                                                                          aaaaTGCATATATAAGAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGa                                                           <  2:1192417/148‑1 (MQ=255)
                                                                                           aaaTGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTTCTTATACCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTAGTTATATGATATTTAGGaa                                                          <  1:1250081/149‑1 (MQ=255)
                                                                                              tGCATATATAACAATGTTTTGATTGCCCATGAACTTCCTTGATAAACACACTCCTTATTAATGTTAAATAAATCATAGTAAGTGCTGAGTATTTTTAACTTACGGTGTTGTTGAGTTTTAATAGGTTTATATATGATATTTAGTAATga                                                       >  2:1259970/1‑149 (MQ=255)
                                                                                               gCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATgag                                                      <  2:547273/149‑1 (MQ=255)
                                                                                               gCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATgag                                                      <  2:1539601/149‑1 (MQ=255)
                                                                                                cATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATgaga                                                     >  1:777332/1‑149 (MQ=255)
                                                                                                 atatatAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGAt                                                    <  1:524945/149‑1 (MQ=255)
                                                                                                  tatataACAATGTTTTGATTGCCGTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATg                                                   >  1:1279967/1‑149 (MQ=255)
                                                                                                  tatataACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATg                                                   <  1:1564199/149‑1 (MQ=255)
                                                                                                    tataACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCt                                                 <  1:260985/149‑1 (MQ=255)
                                                                                                    tataACAATGGTTTTATTGCCCGTGAACTTCCTTGGTAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCt                                                 <  2:1387305/149‑1 (MQ=255)
                                                                                                       aaCAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTAtt                                              >  2:1424788/1‑149 (MQ=255)
                                                                                                        aCAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTa                                             >  2:60383/1‑149 (MQ=255)
                                                                                                           aTGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACgg                                          >  1:494772/1‑149 (MQ=255)
                                                                                                           aTGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACgg                                          >  1:1489159/1‑149 (MQ=255)
                                                                                                            tGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGa                                         >  2:170749/1‑149 (MQ=255)
                                                                                                               tttGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATaa                                      >  2:91207/1‑149 (MQ=255)
                                                                                                                ttGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATaaa                                     <  2:720422/149‑1 (MQ=255)
                                                                                                                   aTTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTTATTAGTTATTTATATGATATTTAGGAATGGGTTGCTATTACGGATAAAGTa                                  >  2:1228185/1‑149 (MQ=255)
                                                                                                                   aTTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTa                                  >  1:803894/1‑149 (MQ=255)
                                                                                                                   aTTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTa                                  >  2:1533336/1‑149 (MQ=255)
                                                                                                                    ttGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTaa                                 >  1:1406163/1‑149 (MQ=255)
                                                                                                                    ttGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGATTAGTTACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTaa                                 <  2:1469404/149‑1 (MQ=255)
                                                                                                                       cccTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAAt                              >  2:712843/1‑149 (MQ=255)
                                                                                                                       cccTTGAACTTCCTGGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAAt                              <  1:1264074/149‑1 (MQ=255)
                                                                                                                        ccTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATc                             <  1:426120/149‑1 (MQ=255)
                                                                                                                        ccTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATc                             <  2:1192006/149‑1 (MQ=255)
                                                                                                                        ccTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATc                             <  2:558117/149‑1 (MQ=255)
                                                                                                                        ccTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATc                             <  1:507332/149‑1 (MQ=255)
                                                                                                                          ttGAACTTCCTTGCTAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTACCGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATGTGATATTTAGGACTCAGATGCTATTACGGCTAAAGTAAAATACt                           >  2:768491/1‑149 (MQ=255)
                                                                                                                          ttGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCt                           <  1:1223610/149‑1 (MQ=255)
                                                                                                                          ttGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCAGATTAATGGCTCAGTAACGTTATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCt                           <  2:1470721/149‑1 (MQ=255)
                                                                                                                                           tCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTAc          >  1:630113/1‑149 (MQ=255)
                                                                                                                                           tCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTAc          >  1:199997/1‑149 (MQ=255)
                                                                                                                                           tCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGAGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTAc          >  1:235088/1‑149 (MQ=255)
                                                                                                                                            cTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACt         <  2:876870/149‑1 (MQ=255)
                                                                                                                                            cTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACt         <  1:1013083/149‑1 (MQ=255)
                                                                                                                                            cTGGCTAACTGTTTCTGCTAAATAAATCCTATTAATGGCGCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTgtgact         <  2:799456/149‑6 (MQ=255)
                                                                                                                                             tGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTc        >  2:457401/1‑149 (MQ=255)
                                                                                                                                               gCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCAt      <  1:170749/149‑1 (MQ=255)
                                                                                                                                                 tAATTATTCCTGCTAAATAAATCATATTAATGGCTCCGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGCTGCTATTACGGATAAAGTGAAATCCTATATGCATGCGTGCTACTCAttt    >  1:767329/1‑149 (MQ=255)
                                                                                                                                                 tAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTGCTCAttt    >  1:267962/1‑149 (MQ=255)
                                                                                                                                                 tAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCAttt    >  1:684694/1‑149 (MQ=255)
                                                                                                                                                   attattCGTGATAAATATATCATATTAATGGCTCATTAACGTGATGTGGCGGGTCTTTTTAATTTAAACAGGTATGTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCATTTAt  <  2:1525690/149‑1 (MQ=255)
                                                                                                                                                   attattCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGGTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCATTTAt  >  2:1099231/1‑149 (MQ=255)
                                                                                                                                                   attattCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCATTTAt  <  2:619976/149‑1 (MQ=255)
                                                                                                                                                   attattCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTACGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCATTTAt  <  1:8905/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
AGGAGTGTGGTTGTTTTCAAGGGCAAAAAAAGGGCATAATTTTGAAACAAAGGGCAAGGGTATGAATAATAAATTATCTTGAAAATTTTATAAATGCATATATAACAATGTTTTGATTGCCCTTGAACTTCCTTGATAATCTGGCTAATTATTCCTGCTAAATAAATCATATTAATGGCTCAGTAACGTGATGTTGCTGGGCTTTTTAATTTAAACAGGTATTTATATGATATTTAGGAATGAGATGCTATTACGGATAAAGTAAAATCCTATATGCATGCGTGCTACTCATTTAT  >  USA300TCH1516_ALE/909593‑909888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.