Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_012417	674	786	113	2 [1]	[1] 2	USA300HOU_RS14890	replication protein

TCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAATGGGTTAATTTATGGCAAAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAA  >  NC_012417/525‑735                                                                                                                                                     |                                                               tCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAATGGGTTAATTTATGGCAAAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAGCCGa                                                                >  1:230166/1‑149 (MQ=255)                                                               taACTCAAGAAGAATGGGTTAAATTAAGGCAAAGAGCATTACAAGTTGACTGTCGACCTGTTGATAATGATAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAAAATTAGGTTaaa  >  2:1622161/1‑149 (MQ=255)                                                                                                                                                     |                                                               TCAGCACATGCATGTTTTGTTATGTGTTGAAAATGCATATTTTAGAAAAAAAGAGAATTATATAACTCAAGAAGAATGGGTTAATTTATGGCAAAGAGCATTACAAGTTGACTATCGACCTGTTGCTAATGTTAAAGCGATCAAACCGAATAGAAAAGGCGATAAAGACATTGAATCGGCAATCAAAGAGACCTCAAAATATTCGGTTAAA  >  NC_012417/525‑735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑