Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_012417	2504	2619	116	3 [0]	[0] 2	USA300HOU_RS14900	hypothetical protein

TTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTT  >  NC_012417/2620‑2768 |                                                                                                                                                     ttAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACtt  >  1:1597324/1‑149 (MQ=255) ttAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAATTTTTTTAttt  >  2:410219/1‑149 (MQ=255) |                                                                                                                                                     TTAAAGATACTACTAAAATCTTTCTTAGTGATATACTGTTTTGAATTGCATTCATTGTAAATGCCCCCTTGTTTTGTTATTTAAATGAATTCAATATAATATTAACATATAAAAACAAAGGAGTTTAATATGAATAAGTTTTTTTACTT  >  NC_012417/2620‑2768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑