Predicted mutation
evidence seq id position mutation annotation gene description
RA USA300TCH1516_ALE 367,644 G→T intergenic (‑96/‑62) nanA ← / → bglK N‑acetylneuraminate lyase/Beta‑glucoside kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE367,6440GT99.5% 605.9 / NA 185intergenic (‑96/‑62)nanA/bglKN‑acetylneuraminate lyase/Beta‑glucoside kinase
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base T (102/82);  total (103/82)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 185 total aligned reads displayed.

TCAAAAGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTAGTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTATCAA  >  USA300TCH1516_ALE/367499‑367789
                                                                                                                                                 |                                                                                                                                                 
 caAAAGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCat                                                                                                                                               >  1:73225/1‑149 (MQ=255)
 caAAAGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCat                                                                                                                                               >  1:507733/1‑149 (MQ=255)
 caAAAGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCACTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTTTTCat                                                                                                                                               >  2:589920/1‑149 (MQ=255)
  aaaaGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCata                                                                                                                                              <  1:381687/149‑1 (MQ=255)
   aaaGGAACGAGTAACGCTGCATATAAACCTTTTACATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTCGATAATATAGTTTACAGCTATACTTGAAAAAGATATCAGAAAATGTAACAATATCTTTTTGAAAATTGTATTCatat                                                                                                                                             >  2:1032498/1‑149 (MQ=255)
   aaaGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCatat                                                                                                                                             <  2:47637/149‑1 (MQ=255)
   aaaGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGGTACAATATCTTTTTGAAAATTGTATTCatat                                                                                                                                             <  2:533970/149‑1 (MQ=255)
       gAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTAt                                                                                                                                         <  2:1596504/149‑1 (MQ=255)
        aaCGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATg                                                                                                                                        >  2:417943/1‑149 (MQ=255)
         aCGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATACTTGTAAACGCTATCATAAAATGTAACAATATATTTTTGAAAATTGTATTCATATTTATGt                                                                                                                                       >  1:1637213/1‑149 (MQ=255)
         aCGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCAGTTGATAATATAGTTGACAGCTATAATTGTATACGCGGACATAAAATGGGAGATGAGCTTTTTGATAAGTGTATGCatatctgtga                                                                                                                                       >  1:357423/1‑143 (MQ=255)
                aCGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTAtaatta                                                                                                                                <  1:119045/149‑1 (MQ=255)
                    tGCATATAACCCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGa                                                                                                                            <  2:174414/149‑1 (MQ=255)
                    tGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGa                                                                                                                            >  1:1400166/1‑149 (MQ=255)
                        tataAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAAt                                                                                                                        <  2:655827/149‑1 (MQ=255)
                        tataAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATAAATGAAAAt                                                                                                                        >  2:1480894/1‑149 (MQ=255)
                        tataAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATAGTGAGTGGTAACAATAGCTGTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAAt                                                                                                                        >  2:1648295/1‑149 (MQ=255)
                         ataAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATg                                                                                                                       >  1:774089/1‑149 (MQ=255)
                          taAACCTTTTAAATCTTTGGTCATTATGAAGTCCCTCCAAAAATCATTTCATAATATAGTTTACAGATATAATGTTAAAGGCTATCATAAATGTTATGAATATCATTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAGATGt                                                                                                                      >  2:250709/1‑149 (MQ=255)
                           aaaCCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGtt                                                                                                                     >  1:420352/1‑149 (MQ=255)
                           aaaCCTTTTAAATCTTTGTTCATTATGAAGTACCTCCAAAAATCATTTGATAATATCGTTTACAGCTATACTTGTATACGCTTTCATACAATGTAACAATATCTTTTTGAAGATTGTATTCATATTTATGTATAATTAATGAAAATGtt                                                                                                                     >  2:493364/1‑149 (MQ=255)
                                 tttAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTTaa                                                                                                               >  2:1308664/1‑149 (MQ=255)
                                  ttAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCaaa                                                                                                              <  2:255470/149‑1 (MQ=255)
                                  ttAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTAATATTTATGTATAATTAATGAAAATGTTTTTCaaa                                                                                                              >  2:649753/1‑149 (MQ=255)
                                  ttAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAAAGTAACAATATCTTTGTGGAAATTGTTTTCATATTTATGTATAATTACTGAAAATGTTTTTCaaa                                                                                                              >  2:699733/1‑149 (MQ=255)
                                  tcaaaTCTTTGTTAAATATGAAGTCCCTTCCAAAATCATTTGATAATATTGTTTACAGCTATAATTGTAAACGTTTTCATAAAATGTAACAATATCGTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCaaa                                                                                                              <  2:1380043/147‑1 (MQ=255)
                                          ttGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAGTTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAAATGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATaa                                                                                                      >  2:1125586/1‑148 (MQ=255)
                                          ttGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTTTTTTTTGTTTTCATATTTATGTATAATTAATGATAATGTTTTTCAAaataaataa                                                                                                      >  2:1693471/1‑148 (MQ=255)
                                          ttGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAg                                                                                                      >  1:1553217/1‑149 (MQ=255)
                                           tGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGATTTTTGTTTTCATATTTTTGTATAATTAATGAAAATGTTTTTCAAAATCAATAGa                                                                                                     >  2:524954/1‑149 (MQ=255)
                                           tGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGa                                                                                                     >  2:613292/1‑149 (MQ=255)
                                             ttCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGaaa                                                                                                   <  1:1197799/149‑1 (MQ=255)
                                             ttCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGaaa                                                                                                   <  1:1294988/149‑1 (MQ=255)
                                             ttCATTATGAAGTCCCTACAAAAATCATTTGATAATATAGTGTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTGTTTGAAAATTGTATTCATATTTAGGTATAATTAATGAAAATGTTTTTCAAAATCAATAGaaa                                                                                                   <  2:73768/149‑1 (MQ=255)
                                             ttCATTATGAAGTCCATCCAACAATCCTTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTCAGTAGTATTAATGAAAATGTTTTTCAAAATCAATAGaaa                                                                                                   <  2:369396/149‑1 (MQ=255)
                                              tCATTATGAAGTCCCTCCAAAAATCATTTGATANTATAGTATACAGCTATAATTGTAAAAGATATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAAt                                                                                                  <  1:244818/149‑1 (MQ=255)
                                              tCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATAAATAGAAAt                                                                                                  >  2:1358223/1‑149 (MQ=255)
                                                aTTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATgg                                                                                                <  1:1515803/149‑1 (MQ=255)
                                                     gAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtga                                                                                           <  1:985061/149‑1 (MQ=255)
                                                     gAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtga                                                                                           >  2:1515801/1‑149 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAACATGTAACACTATCTTTTTGACAATTGTCTTCATATTTATGTCTACTTAATGAAAATGTTTTTCAAATTATATAGCATTGgaggggg                                                                                          >  2:1323253/1‑145 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtgag                                                                                          >  1:1009037/1‑149 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtgag                                                                                          >  1:689060/1‑149 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtgag                                                                                          <  1:622845/149‑1 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtgag                                                                                          >  2:1578622/1‑149 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtgag                                                                                          >  1:1509063/1‑149 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagtgag                                                                                          >  1:1139493/1‑149 (MQ=255)
                                                      aaGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGgagagag                                                                                          >  2:153056/1‑149 (MQ=255)
                                                              ccAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGgtgt                                                                                  <  1:32716/149‑1 (MQ=255)
                                                                aaaaaTCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAAAAATATCTTTTTGAAAATTGTATTCAAATTGAATTATCATCAATGAAAATGTTTTTCAAAATCCATAGAAATGGAGTAAGTAAGGTGTAt                                                                                >  1:822711/1‑149 (MQ=255)
                                                                  aaaTCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTTAAAATTTTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTa                                                                              >  2:1065417/1‑149 (MQ=255)
                                                                     tCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACAt                                                                           <  2:694436/149‑1 (MQ=255)
                                                                     tCATTTGATAATAGTGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATATAAATGGAGTGAGTAAGGTGTATTACAt                                                                           <  1:1032498/149‑1 (MQ=255)
                                                                        tttGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATctc                                                                        >  1:361763/1‑147 (MQ=255)
                                                                        tttGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGc                                                                        >  2:888455/1‑149 (MQ=255)
                                                                         ttGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCa                                                                       >  2:1383330/1‑149 (MQ=255)
                                                                         ttGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATAGCa                                                                       >  1:1657068/1‑149 (MQ=255)
                                                                          tGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCaa                                                                      <  2:1037675/149‑1 (MQ=255)
                                                                           gATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGTAAATTGTTTTAATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGCGAGTAAGGTGTATTACATCGCAAt                                                                     >  2:465568/1‑149 (MQ=255)
                                                                            ataataTAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATTTTTTTGAAAATTGTATTCATAATTATGTCTAAATAATGAAAATGTTTTTTAAAATCAATAGAAATGGAGTGAGTAAGGTCTATTACATAGCaagc                                                                    >  2:1039945/1‑147 (MQ=255)
                                                                              aataTAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGa                                                                  <  2:881130/149‑1 (MQ=255)
                                                                                tataGCTGACAGCTAGAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGata                                                                <  1:1476579/149‑1 (MQ=255)
                                                                                    gTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTgg                                                            >  1:1327064/1‑149 (MQ=255)
                                                                                     tttACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTAGATCGCAATCGATATTggg                                                           >  1:472511/1‑148 (MQ=255)
                                                                                     tttACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGa                                                           >  1:1262463/1‑149 (MQ=255)
                                                                                      ttACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAg                                                          <  2:1526543/149‑1 (MQ=255)
                                                                                         aaGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCa                                                       <  1:1531951/148‑1 (MQ=255)
                                                                                         aaGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCa                                                       <  1:1128061/148‑1 (MQ=255)
                                                                                           gCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACt                                                     >  1:842159/1‑149 (MQ=255)
                                                                                             tataATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGATTTTCAAAATCAATAGAAATGGAGTGAGTCAGGTGTATTACATCGAGACCGATATTGGAAGcacaca                                                   >  2:813695/1‑149 (MQ=255)
                                                                                             gataATTGTACCCGCTACCATAAAAAGTAACAATATCTTTTTGAAAATTGTATTCATATTAATGTATAATTAAGGAAAATGCTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATGACATCGCAATCGATCTTGCAGGCACCCa                                                   >  2:139830/2‑149 (MQ=255)
                                                                                              ataATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCaa                                                  >  1:297418/1‑149 (MQ=255)
                                                                                               taATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCaaa                                                 <  1:547199/149‑1 (MQ=255)
                                                                                                     tAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCATAATCAATAGAAATGGAGTGAGTAAGGTGGAATAAATCGTAATTGATTTTTGAGGCACTCAAAtgtata                                           >  2:1217425/1‑144 (MQ=255)
                                                                                                     tAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAAt                                           >  1:1220444/1‑149 (MQ=255)
                                                                                                     tAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATAAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATAATGGAGGCACTCAAATTAAAt                                           >  2:856629/1‑149 (MQ=255)
                                                                                                       aaCGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCg                                         >  1:1438882/1‑149 (MQ=255)
                                                                                                       aaCGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCg                                         >  1:872643/1‑149 (MQ=255)
                                                                                                         cGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATAGCAATCGATATTGGAGGCACTCAAATTAAATCGGc                                       >  1:1183941/1‑149 (MQ=255)
                                                                                                                  aaaaTGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGa                              >  1:948970/1‑149 (MQ=255)
                                                                                                                    aaTGTAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATa                            >  1:596263/1‑149 (MQ=255)
                                                                                                                        tAACAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCa                        >  1:678471/1‑149 (MQ=255)
                                                                                                                         aaCAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTTTTTTTTTTTTGAAATGGAGTGAGCAAGGAGTATTACATCGCAATCGATAGTGGAGGCACGCAATTTATCTCGGCAGTTATTGATAAgtat                       >  2:939743/1‑146 (MQ=255)
                                                                                                                         aaCAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGATGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATAGGCAGTTATTGATAAGCaa                       >  2:344401/1‑149 (MQ=255)
                                                                                                                         aaCAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTCTATTCCGTGCGATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCaa                       <  1:398643/149‑1 (MQ=255)
                                                                                                                          aCAATATTCTTTTGAAAAGTGTATTCAGATTTATGTATAATTAATGAAAATGTTTTTCCAAATCACTAGAAATGGAGCGAGTAAGGTGTATCACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAAt                      <  1:53168/149‑1 (MQ=255)
                                                                                                                          aCAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAAt                      <  2:297418/149‑1 (MQ=255)
                                                                                                                           cAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAATTTAAATCGGCAGTTATTGATAAGCAAtt                     <  1:1088496/149‑1 (MQ=255)
                                                                                                                           cAATATCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGAGAGCACTACAATTAAATCGGCAGTTAATGATAGGCAAtg                     >  2:126654/1‑148 (MQ=255)
                                                                                                                             atatCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGAAAGGTGTATTACATCCAAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAGGCAATTGa                   >  2:868322/1‑149 (MQ=255)
                                                                                                                              tatCTTTTTGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATAAAATCGGCAGTTATTGATAAGCAATTGaa                  <  1:888455/149‑1 (MQ=255)
                                                                                                                              tatCATTTTGAAAATTGTATTCATATTTATGTATGCTTACTGAACATGATTTACAAAAGCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGaa                  <  2:361763/149‑1 (MQ=255)
                                                                                                                                  tttttGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGGAAGGTGTATTACATCGCAATCGTTATTGGAGGCACTCAAATTCAACCAGAAGGTAATGATAAGCAAATGAATATg              >  1:1595509/1‑149 (MQ=255)
                                                                                                                                      tGAAAATTGTATTTATATTTATGTATAATTAATGAATATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATTGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTTTTGATAAGCAATTGAATATGTTTg          <  2:61986/149‑1 (MQ=255)
                                                                                                                                      tGAAAATTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTg          <  1:746051/149‑1 (MQ=255)
                                                                                                                                           aTTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTAt     <  1:538591/149‑1 (MQ=255)
                                                                                                                                           aTTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTAt     <  2:774089/149‑1 (MQ=255)
                                                                                                                                           aTTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTAt     <  1:653451/149‑1 (MQ=255)
                                                                                                                                           aTTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTAt     <  2:1508525/149‑1 (MQ=255)
                                                                                                                                           aTTGTATTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTAt     <  1:138836/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
TCAAAAGGAACGAGTAACGCTGCATATAAACCTTTTAAATCTTTGTTCATTATGAAGTCCCTCCAAAAATCATTTGATAATATAGTTTACAGCTATAATTGTAAACGCTATCATAAAATGTAACAATATCTTTTTGAAAATTGTAGTCATATTTATGTATAATTAATGAAAATGTTTTTCAAAATCAATAGAAATGGAGTGAGTAAGGTGTATTACATCGCAATCGATATTGGAGGCACTCAAATTAAATCGGCAGTTATTGATAAGCAATTGAATATGTTTGACTATCAA  >  USA300TCH1516_ALE/367499‑367789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: