| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,834,119 | G→A | intergenic (+68/‑46) | osmC → / → USA300HOU_RS09140 | Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,834,119 | 0 | G | A | 99.3% | 492.1 / NA | 145 | intergenic (+68/‑46) | osmC/USA300HOU_RS09140 | Peroxiredoxin OsmC/Soluble hydrogenase 42 kDa subunit |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (52/92); minor base C (1/0); total (53/92) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.66e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 145 total aligned reads displayed.
AATAATTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTATGGTTGGTCATCGTTCT > USA300TCH1516_ALE/1833977‑1834263 | aataatTGGATGAGTTCAAATGCAGTAAGAAATAATGTTGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAAtt < 1:1531622/149‑1 (MQ=255)aataatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAAtt < 1:456667/149‑1 (MQ=255) ataatTTCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAAttt < 1:1592560/149‑1 (MQ=255) ataatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAAttt < 1:1127102/149‑1 (MQ=255) ataatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAAttt < 2:468453/149‑1 (MQ=255) taatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCCAAAAATTTg > 2:393706/1‑149 (MQ=255) taatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTg < 1:280842/149‑1 (MQ=255) taatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTg > 2:776473/1‑149 (MQ=255) taatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTg > 2:659353/1‑149 (MQ=255) aaatTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTg < 1:547271/148‑1 (MQ=255) aatGGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTAACCCATCATTCAGCCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTCTTAGGCCTTTAAATTTTCAAAAAATTTGc < 2:1179015/149‑1 (MQ=255) aTGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTGAATTTTCAAAAAATTTGCTAAAAt < 1:855703/149‑1 (MQ=255) tGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATa > 2:1406930/1‑149 (MQ=255) gATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAg < 2:513438/149‑1 (MQ=255) gATCTCAAATGCTGTAAGAAACAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAg < 2:58937/149‑1 (MQ=255) atatCAAATTCTGTAAGAAATAATAAGAACAAAAAAATTTATCCAATGATTAAGGCCAAATA‑AGAACGTGTCGGGATTACGTTTGTTCGACCATATAGCGTTATCACTTTTTTAGGTTAAAAAAAAAAAAAAAAATTTGCTAAAATAGt < 2:1053804/146‑1 (MQ=255) aTTTCCAATTCTGTAAGAAATAATTTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGt < 2:791750/149‑1 (MQ=255) aTTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCATGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGt < 1:1681257/149‑1 (MQ=255) aTTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGt < 2:127127/149‑1 (MQ=255) aTTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGt < 1:612060/149‑1 (MQ=255) aTTTCAAAGAGTTTAAGAAATAATGTGGACATAAAAGTCTATCCCATCGTTCAGGCCAAATA‑AAATCGTTGAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGt < 2:515271/149‑1 (MQ=255) aaaTGCTGTAAGAAATAATGTGGACATAAAAATATAACCCATCATTCAGGCCAAATA‑TAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCCTTATCAATTTGCTAGGCTTTTAAATCTTCAAAAAATTTGCTAAAATAGTGAAAt < 2:466593/149‑1 (MQ=255) aaaTGCTGCAAGAGATAATGTGGACATAAAAATCTATCCCATCATTCATGCCAAATA‑AAATCGTTAATTGATAACGTTTTTTAGAAAATAAAGCTGTATCACTTTTTTATTCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAAt < 2:1214585/149‑1 (MQ=255) aaTGCTTGAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTAGCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATc < 1:236436/149‑1 (MQ=255) aaTGCTGTGAGAAATAATGGGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATc < 2:752429/149‑1 (MQ=255) aaTGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATc < 2:1259624/149‑1 (MQ=255) aaTGATGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATc < 2:122678/149‑1 (MQ=255) aTGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCA‑GCGGAGTAGGGTTCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAATATTTGCTAAAATAGTGAAATCt < 1:903640/149‑1 (MQ=255) tGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCtt < 2:1686096/149‑1 (MQ=255) tGCAGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAACTTTCAAAAAATTTGCTAAAATAGTGAAATCtt < 2:1022911/149‑1 (MQ=255) ggtggagaaagaaTGGTGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCttat < 2:424457/144‑1 (MQ=255) gAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTGTCACTTTTTTAGGCTTTTAAATTTTCAAAAATTTTGCTCAAATAGAGAAATCTTATTTATag > 2:89334/1‑149 (MQ=255) gAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATag > 2:14693/1‑149 (MQ=255) gAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATag > 2:114572/1‑149 (MQ=255) aaaTAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATagg > 2:832448/1‑149 (MQ=255) ataatGTGGACATAAACATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATaggag < 1:1454414/149‑1 (MQ=255) taatGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAACCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATaggagg < 1:1208551/149‑1 (MQ=255) aatGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGc < 1:503139/149‑1 (MQ=255) gttgACATAAAAATCTATCCCATCATTCAGGCCAAATA‑ATATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCata < 2:620447/146‑1 (MQ=255) gtgGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTCTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCata < 1:1118474/149‑1 (MQ=255) ggACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGTCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTTTAGACGGCAtata > 2:1533268/1‑149 (MQ=255) agagaaaaaTCTATCCCATCATTCAGGCCAAATA‑AGATCGTTGAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa < 2:1162191/145‑1 (MQ=255) aCATAAAAATCTATCCCATCATTCAGGCCATATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTGTTAAATTTTCAAAAAATTTGCTAAAATCGTGCAATCTTATTTATAGGAGGCCTATaaa < 2:1266679/149‑1 (MQ=255) aCATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa < 2:1102261/149‑1 (MQ=255) aCATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGGTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa < 1:229984/149‑1 (MQ=255) aCATAAAAATCGAGCCCATCAATCAGGCCCAATC‑AAATCCTTCAGTGATAACGTTTCTCCGACAATATAGCGTTATCACTTTTTTAGGCTTAAAAAAAAAAAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATaaa < 2:1372740/149‑1 (MQ=255) tAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGt < 1:1483981/149‑1 (MQ=255) aaaaaTCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGta < 2:582378/149‑1 (MQ=255) aaaaTCTATCCCATCATTCAGGCCAAATA‑CAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtat > 2:956611/1‑149 (MQ=255) aaaaTCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtat > 1:176379/1‑149 (MQ=255) aTCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtattat < 2:598216/149‑1 (MQ=255) aTCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtattat < 1:73613/149‑1 (MQ=255) aTCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGtattat < 2:1309294/149‑1 (MQ=255) cTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatca > 2:114183/1‑149 (MQ=255) cTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGAAGGCATATAAATGTATTatca > 2:113538/1‑149 (MQ=255) tATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTCTTAAATTTTCCAAAAATTTGCTATAATAGTGAAATCTTATTTATAGGAGGCATATAGATGTATTatcat > 1:477629/1‑149 (MQ=255) tATCCCATCATTCAGGCCAAATA‑AAATCCTTAAGTGATAACGTTTGTTCGACAATATAGCGTGATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTatcat > 1:1117029/1‑149 (MQ=255) tCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTAtcatca < 1:1200296/149‑1 (MQ=255) tCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTAtcatca > 2:307276/1‑149 (MQ=255) tCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTAtcatca < 1:776696/149‑1 (MQ=255) cccATCATTCAGGCCAAATA‑AAATCGTTAAGTGCTAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATACATGTATTATCATCaa > 2:1425110/1‑149 (MQ=255) caatcatTCAGGCCAAATA‑AAATCGTTAATTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGATTATAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAc < 2:25375/147‑1 (MQ=255) atcatTAAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATAACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTACAGGAGGCATATAAAAGTATTATCATCCACCg > 2:660374/1‑149 (MQ=255) tcatTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgt < 1:345854/149‑1 (MQ=255) catTCAGGGCAAATA‑AAAGCCTTAAGAGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCGTATAAATGTATTATCATCAACCgtt < 1:340798/149‑1 (MQ=255) catTCAGGCCAAATA‑AAATCGTTCAGTGATAACGTTTGTTCGACACGATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt < 1:1603377/149‑1 (MQ=255) catTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCgtt < 2:1011546/149‑1 (MQ=255) cAGGCCAAATA‑AATTCGTTAAGTGATAACGTTTGTTCGACAATATATCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGtta < 1:454676/149‑1 (MQ=255) cAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGtta < 2:678502/149‑1 (MQ=255) cAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGtta < 1:154801/149‑1 (MQ=255) aGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGttat > 1:908369/1‑149 (MQ=255) ccAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTaa > 2:629098/1‑149 (MQ=255) aaaTCGTTAAATAATAACGTTTGTTCGACAATATAGCGCTCTCATTTTATTGTGTAATCAAAATTTCAAAAAATTTGCTAAAATAGTGAAAGCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTgg < 2:1648136/149‑1 (MQ=255) aaTCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATATTATTGATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGc > 1:1513954/1‑149 (MQ=255) aGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAAcccc < 1:832448/149‑1 (MQ=255) gTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCt > 2:802788/1‑149 (MQ=255) tGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTg > 1:1380624/1‑149 (MQ=255) gATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGt > 1:1391510/1‑149 (MQ=255) tAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTAc > 1:20075/1‑149 (MQ=255) tGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGc < 2:915448/149‑1 (MQ=255) tGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTCGTTATTAACACCTGGCCCAACCCCTGTACCTGATGc < 2:803144/149‑1 (MQ=255) ttCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCa < 2:868122/149‑1 (MQ=255) ttCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCa < 2:1501184/149‑1 (MQ=255) ttCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCa < 2:784231/149‑1 (MQ=255) ttCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCa > 1:508691/1‑149 (MQ=255) ttCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCa < 1:776473/149‑1 (MQ=255) gACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTa < 1:1469096/149‑1 (MQ=255) gACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTa < 1:665533/149‑1 (MQ=255) aCAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAACCGTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTAt > 2:621592/1‑149 (MQ=255) acatatAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAAATTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATg < 2:422816/147‑1 (MQ=255) aaaTATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATg < 1:238197/148‑1 (MQ=255) aGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGaa > 1:1433222/1‑149 (MQ=255) cTTTTTTAGGCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCAc > 1:967341/1‑149 (MQ=255) ggCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTAtggtt < 1:307276/149‑1 (MQ=255) gCTTTTAAATTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGGGAGAAATTCAAGCACCTAtggttg > 2:1072885/1‑149 (MQ=255) tttAACTTTTGACAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAAACGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTGAAGCACCTATGGTTGGTc > 2:1056811/1‑149 (MQ=255) aaaTTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTATGGTTGGTCATc > 1:1691038/1‑149 (MQ=255) aTTTTCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTATGGTTGGTCATCGt > 2:930126/1‑149 (MQ=255) ttCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTATGGTTGGTCATCGTTCt > 2:558207/1‑149 (MQ=255) ttCAAAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTATGGTTGGTCATCGTTCt > 2:1536828/1‑149 (MQ=255) | AATAATTGCATGATTTCAAATGCTGTAAGAAATAATGTGGACATAAAAATCTATCCCATCATTCAGGCCAAATA‑AAATCGTTAAGTGATAACGTTTGTTCGACAATATAGCGTTATCACTTTTTTAGGCTTTTAAATTTTCAGAAAATTTGCTAAAATAGTGAAATCTTATTTATAGGAGGCATATAAATGTATTATCATCAACCGTTGTTATTAACACCTGGCCCAACCCCTGTACCTGATGCCATTATGAGAGAAATTCAAGCACCTATGGTTGGTCATCGTTCT > USA300TCH1516_ALE/1833977‑1834263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |