| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | USA300TCH1516_ALE | 632,405 | T→G | I177S (ATT→AGT) | proP → | Proline/betaine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 632,405 | 0 | T | G | 99.0% | 671.7 / NA | 195 | I177S (ATT→AGT) | proP | Proline/betaine transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base G (109/83); total (110/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 195 total aligned reads displayed.
GTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGATTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGTT > USA300TCH1516_ALE/632260‑632550 | gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGc < 1:1017364/149‑1 (MQ=255)gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGc < 2:588372/149‑1 (MQ=255)gTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGc < 2:1100313/149‑1 (MQ=255) tactacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCt > 2:1539954/1‑149 (MQ=255) tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTa > 2:832275/1‑149 (MQ=255) tacAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTa > 1:490712/1‑149 (MQ=255) acAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTAt > 2:170390/1‑149 (MQ=255) aaGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGGAATTGGGACATTATCAGGTTACATAGCTGCTTCCATTATGAGAGCTGTATTa > 1:64028/1‑149 (MQ=255) aaGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTa > 1:416110/1‑149 (MQ=255) aGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTaa > 1:470094/1‑149 (MQ=255) ggTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACa > 2:1422404/1‑149 (MQ=255) tttCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTc > 2:1425855/1‑149 (MQ=255) ttCAACAGGTGGAGGGTATGCGGGGGCAATGACATATGTTGCCGAATCACCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGCTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCt < 2:889492/149‑1 (MQ=255) ttCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCt < 2:329239/149‑1 (MQ=255) ttCAACAGGCAGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCt < 2:1339707/149‑1 (MQ=255) cAACATGGGGAGACTATGCCGGGGCAATGACATATTTTGCCGAATCATCTCCATATAAGCTTCGTAACTCATTACGTATTAGACCAGCAATTGCGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCttt < 2:948605/149‑1 (MQ=255) aaCAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:1114418/149‑1 (MQ=255) aaCAGGTGGAGAGCATGCGGGGGTAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCtttt < 1:1204225/149‑1 (MQ=255) cAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTa < 1:1239687/149‑1 (MQ=255) cAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTa < 1:1247478/149‑1 (MQ=255) aGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTaa < 2:132659/149‑1 (MQ=255) ggAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGa > 1:292339/1‑149 (MQ=255) gagTATGGGGGGGCAATGACATATGTTGCCGAATCATCCCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGa < 2:1374969/149‑1 (MQ=255) ggTATGCGGGGGCAATGACATATGTTGACGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGaa < 2:1580774/148‑1 (MQ=255) agTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGaa < 2:1444004/149‑1 (MQ=255) aTGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACaa < 1:1106844/149‑1 (MQ=255) gCAATGACATATGTTGCCGAATCATCTCCAGATACGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGcatc > 2:1218965/1‑149 (MQ=255) cATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttggt > 1:1301867/1‑149 (MQ=255) atatGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATttggtt > 1:567947/1‑149 (MQ=255) ttGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGgaga > 1:1645343/1‑149 (MQ=255) tGCCGAATCATCTCCAGGTAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTGTTTAACAGCTGAACAAATGGCCTCATTTGGGTGgcgag > 1:448348/1‑148 (MQ=255) tGCCGAATCATCTCCAGGTAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTAGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 2:1106076/1‑149 (MQ=255) tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:1517018/1‑149 (MQ=255) tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:1060556/1‑149 (MQ=255) tGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGaa > 1:539235/1‑149 (MQ=255) gCCGAATCGTCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAAt < 1:328562/149‑1 (MQ=255) gCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAAt < 1:1553489/149‑1 (MQ=255) ccGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATc > 2:294311/1‑149 (MQ=255) cGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTCACAGATGAACAAATGGCATCATTTGGTTGGAGAATcc < 2:369675/149‑1 (MQ=255) cGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGACTcc > 1:619205/1‑149 (MQ=255) cGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATcc > 1:1620321/1‑149 (MQ=255) catcTCCAGATAAGAGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTTTTTTTAACAGATGAACAAATGGCATCATTTGGTTGTAGAATCCCATTc < 1:1230779/149‑1 (MQ=255) aTAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGt < 2:1301867/149‑1 (MQ=255) tAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGtt < 1:1422404/149‑1 (MQ=255) aGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTa < 1:588257/149‑1 (MQ=255) gCGTCGTAACTCCTTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGAGGAACAAATGGCATCAATTGGTTGGAGAATCCCATTCTTACTCGGTTTAt > 1:1168359/1‑149 (MQ=255) gCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAt > 1:1708286/1‑149 (MQ=255) cgtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTAtt < 1:76730/149‑1 (MQ=255) gtcgtAATGCACTAGGGAGAGGACGAGGAATTGGGACATTATCAGGTTACATAGCTGCTTCAAGTATGAGCGCGGTATGAACATTCCTTTTAACAGATGAACAGATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGGTTATTc < 1:281659/149‑1 (MQ=255) gtcgtAACTCATTAGGTAGTGGACTATAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTTGAGAATCCCATTCTTACTCGGTTTATTc < 1:1043241/149‑1 (MQ=255) gtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTc > 2:54746/1‑149 (MQ=255) gtcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTc > 1:1367999/1‑149 (MQ=255) tcgtAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTcc > 2:1257168/1‑149 (MQ=255) cgtAACTCATTAGGTAGTGGACTCGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCt > 1:1277379/1‑149 (MQ=255) gtAGCTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTa < 1:648161/149‑1 (MQ=255) aaCTCATTAGGTAGTGGACTAGAAATTGGGACCTTATCAGGGTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAgg < 2:572395/149‑1 (MQ=255) aaCTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAgg < 2:1678498/149‑1 (MQ=255) aCTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGa > 1:40281/1‑149 (MQ=255) aCTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGa < 1:689246/149‑1 (MQ=255) cATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCGATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCACTTCTTACTCGGTTTATTCCTAGGattt > 1:976014/1‑148 (MQ=255) aGGTAGTGGACTAGAAATTTGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCg < 1:724636/149‑1 (MQ=255) ggTAGTGGACTAGAAATTGGGACATTATCAGGTTCCATAGTTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCgg < 2:507314/149‑1 (MQ=255) ggTAGTGGACTAGAAATGGGGAGGTCATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCgg > 2:1703041/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACGTTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 2:1172527/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGattattgtgc > 2:1524766/1‑145 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 1:1592220/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 1:1700638/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATAAACATTCTTTTTACCAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGc > 2:89639/1‑149 (MQ=255) gTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAACTATGAGTGCTGTATTAACATTCTTTTTAACAGGTGAACAAATGGCAGCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTGGGATTAGTCGGc > 2:754597/1‑149 (MQ=255) aGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCtt < 1:832275/149‑1 (MQ=255) aGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCtt > 1:878494/1‑149 (MQ=255) gTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGGATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTta < 1:109543/149‑1 (MQ=255) ggACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTAGTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTtatt > 2:1053451/1‑148 (MQ=255) ggACTAGAAATTGGGACATCATCAGGTTAAATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGGTTATTCCTAGGATTATTCGGAttttt > 2:779185/1‑146 (MQ=255) gAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg > 2:637769/1‑149 (MQ=255) gAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg < 1:1506840/149‑1 (MQ=255) gAAATTGAGACACTATCAGGTTACATAGCTGCTTCAATGATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcg < 2:802992/149‑1 (MQ=255) aaaTTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTAcgt < 1:1333236/149‑1 (MQ=255) tGGGACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTa < 2:60567/149‑1 (MQ=255) ggACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTGCGTCGTCAg > 1:1353177/1‑149 (MQ=255) gACATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACCTCGTAAGc > 2:1106608/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTCTATTTACGGCGTAAGCt > 2:1014920/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:1444752/1‑149 (MQ=255) aCATTATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCt > 1:1360842/1‑149 (MQ=255) ttATCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGga < 1:1015603/149‑1 (MQ=255) tCAGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGgaaga < 2:1592220/149‑1 (MQ=255) aGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAt > 1:537319/1‑149 (MQ=255) aGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAt > 1:1486985/1‑149 (MQ=255) aGGTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGATGGAAGAAt > 2:206369/1‑149 (MQ=255) ggTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTAATGCTGATGGTTATTCGGCTTCTATTTACGTCGTAAGCTGGAAGAATc > 1:1414675/1‑149 (MQ=255) ggTTACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTGGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCTGCTGATATTTACGTCGTAAGCTGGAAGAATc > 1:715974/1‑149 (MQ=255) ttACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCAc > 1:1450969/1‑149 (MQ=255) ttACATAGCTGCTTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCAATTCTTACTCGGTTTATTCCTATGTTTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAAtacc > 2:1038922/1‑146 (MQ=255) aGCTGATTCAATTAAGAGTGCTGTAATAACATTCTTTATAACAGATGAACAAATGGCGTCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTGCTAGAATTATTCGGCTTATATTTACGTCGTAAGCTGGGAGAATCCCCAGttt > 2:1335525/1‑149 (MQ=255) gctgctTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGACGAATCACCGGcttt > 2:264393/1‑149 (MQ=255) tgctTCAATTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCg > 1:314390/1‑149 (MQ=255) ctTCAATTATGACTTCTGTATTAACATTCTCTTTAACAGATGAACAAATGGCATCATTTGGTTGGACAACCCCATCCTCACTCGGCTTATTCCTAGCATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGaa < 2:1379055/149‑1 (MQ=255) aaTTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTGGTAAGATGGAAGAATCACCAGTTTGCGAAAatg > 1:791988/1‑149 (MQ=255) aaTTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAata > 1:927585/1‑148 (MQ=255) aTTATGAGTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTAATCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCAAAGatga > 2:1470393/1‑149 (MQ=255) | GTACTACAAGGGTTTTCAACAGGTGGAGAGTATGCGGGGGCAATGACATATGTTGCCGAATCATCTCCAGATAAGCGTCGTAACTCATTAGGTAGTGGACTAGAAATTGGGACATTATCAGGTTACATAGCTGCTTCAATTATGATTGCTGTATTAACATTCTTTTTAACAGATGAACAAATGGCATCATTTGGTTGGAGAATCCCATTCTTACTCGGTTTATTCCTAGGATTATTCGGCTTATATTTACGTCGTAAGCTGGAAGAATCACCAGTTTTCGAAAATGATGTT > USA300TCH1516_ALE/632260‑632550 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |