| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 740,315 | Δ1 bp | 9.0% | intergenic (+542/+46) | pitA_1 → / ← sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 740,315 | 0 | C | . | 9.0% | 902.4 / 78.5 | 267 | intergenic (+542/+46) | pitA_1/sle1_2 | Low‑affinity inorganic phosphate transporter 1/N‑acetylmuramoyl‑L‑alanine amidase sle1 |
| Reads supporting (aligned to +/- strand): ref base C (119/124); new base . (4/20); total (123/144) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.35e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 282 total aligned reads displayed.
ATACAAAATATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGAATTGT > USA300TCH1516_ALE/740225‑740405 | aCAAAATATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAtctc < 2:1687164/91‑1 (MQ=255) aCAAAATATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAtctc > 2:2695004/1‑91 (MQ=255) aCAAAATATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAtc < 1:1171322/89‑1 (MQ=255) aaaaTATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTcac < 1:3424852/91‑1 (MQ=255) aaaaTATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTcac < 1:1604125/91‑1 (MQ=255) aaaaTATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAAGTTTTTTCAAAAATAAAAAACTAGCAATCTcac < 2:3800851/91‑1 (MQ=255) aaatataaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTcaca > 1:473009/1‑91 (MQ=255) tataaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACatga > 2:2021244/1‑91 (MQ=255) tagaaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACatga < 2:1036228/88‑1 (MQ=255) ataaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACatgat < 2:618364/91‑1 (MQ=255) ataaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACatgat > 2:2568094/1‑91 (MQ=255) ataaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACatgat < 2:350996/91‑1 (MQ=255) taaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCGCatgatg > 1:1949403/1‑91 (MQ=255) taaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAAAAAAAAAAAAAAATAAAAAACTAGCAATCTCACatgatg < 2:921067/91‑1 (MQ=255) aaatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGAtgt < 1:1408163/91‑1 (MQ=255) aaatatGTATGATAGGGAAGGGGGCGATAATTTTTTGTACCAAAATGAAAATTTTTTTTAAAAATAAAAAATTAGCAATCTCACATGAtgt > 2:1652811/1‑91 (MQ=255) aatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGAtgtg > 2:3254142/1‑91 (MQ=255) aatatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAT‑TCACATCATGTGa < 2:812587/91‑1 (MQ=255) atatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGa > 1:1760224/1‑91 (MQ=255) atatGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGa < 1:2050917/91‑1 (MQ=255) atgtatgATAGGGAAGGGTGAGATTATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑At < 2:3602438/91‑1 (MQ=255) atgtatgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑At < 1:2687324/91‑1 (MQ=255) atgtatgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑At < 1:1295529/91‑1 (MQ=255) atgtatgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑At < 1:1297042/91‑1 (MQ=255) tgtatgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAT‑TCACATCATGTGagatt < 1:2564452/91‑5 (MQ=38) tgtatgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAT‑TCACATCATGTGagatt < 2:3657128/91‑5 (MQ=38) gtatgATAGGGAAGGGTGAGATAAATTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTg < 2:2481152/91‑1 (MQ=255) tatgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGc > 2:2470761/1‑91 (MQ=255) atgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCt > 2:2075603/1‑91 (MQ=255) tgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAATAATATAAAACTAGCAATCTCACACGATGTGA‑ATTGCTa > 2:1086614/1‑91 (MQ=255) tgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAT‑TCACATCATGTGAGATTGCTa < 1:2702856/91‑1 (MQ=37) tgATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAT‑TCACATCATGTGAGATTGCTa < 1:3531372/91‑1 (MQ=37) gATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAg < 1:779617/91‑1 (MQ=255) aTACGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGt < 1:3056890/91‑1 (MQ=255) aGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGtat > 1:402713/1‑91 (MQ=255) aGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAAT‑TCACATCATGTGAGATTGCTAGttt < 1:113524/91‑3 (MQ=25) ggAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGtatat > 1:3575911/1‑91 (MQ=255) aGGGTGAGATAATTTTTTGTATCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATc > 2:1877862/1‑91 (MQ=255) aGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATc > 1:3259029/1‑91 (MQ=255) aGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATc < 2:1395245/91‑1 (MQ=255) gggTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCa > 1:1473577/1‑91 (MQ=255) ggTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAg < 1:3222210/91‑1 (MQ=255) ggTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAg > 1:1851423/1‑91 (MQ=255) ggTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAg > 2:3429115/1‑91 (MQ=255) gagaTAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTAc > 1:2633514/1‑91 (MQ=255) aTAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAat < 1:2841260/91‑1 (MQ=255) aTAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAat < 1:167686/91‑1 (MQ=255) aaTTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAattt > 1:2540473/1‑91 (MQ=255) aTTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAattta < 2:1168535/91‑1 (MQ=255) aTTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAattta > 1:3511419/1‑91 (MQ=255) aTTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAattta > 1:569514/1‑91 (MQ=255) ttttttGTACCAAAATGAAAATTTTTTTTAAAAATTAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAatttat > 2:1768674/1‑91 (MQ=255) ttttttGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAatttat < 2:3770660/91‑1 (MQ=255) tttttGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAatttatt > 2:1177127/1‑91 (MQ=255) tttttGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAatttatt > 2:1241379/1‑91 (MQ=255) tttttGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAatttatt < 2:402713/91‑1 (MQ=255) tttttGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAatttatt < 1:258675/91‑1 (MQ=255) tttGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAAtttattta > 2:2300579/1‑91 (MQ=255) ttcgTACCAAAATGAAAATTTTTTTCAAAAACAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAAtttattta > 2:2961085/4‑91 (MQ=255) tGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaat > 2:2832030/1‑91 (MQ=255) tGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaat > 1:374143/1‑91 (MQ=255) tGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaat < 1:3636832/91‑1 (MQ=255) tGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTACttaat > 2:3145950/1‑91 (MQ=255) tACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaatta > 2:2341526/1‑91 (MQ=255) tACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaatta < 2:2186103/91‑1 (MQ=255) tACCAAAATGAAAATTTAAAAAAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaatta < 2:766301/91‑1 (MQ=255) aCCAAAATGAAAATTTTTTTCAAAAATAAAAAGCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaattaa < 1:1043044/91‑1 (MQ=255) aCCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaattaa < 2:1962242/91‑1 (MQ=255) aCCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATttaattaa < 1:710762/91‑1 (MQ=255) ccAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTtaattaat > 2:3867821/1‑91 (MQ=255) aaaTGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGa > 1:1276063/1‑91 (MQ=255) aagAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATg < 2:3119740/89‑1 (MQ=255) tGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGa < 1:2115636/91‑1 (MQ=255) aaaTTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATg < 2:2929924/91‑1 (MQ=255) aaTTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGc > 1:2012841/1‑91 (MQ=255) aTTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCa > 2:433461/1‑91 (MQ=255) tttttttCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCAt < 1:1422688/91‑1 (MQ=255) ttttCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGc < 1:2961047/91‑1 (MQ=255) ttttCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATCTAATTAATGGATGAATGCATAGc < 1:2748078/91‑1 (MQ=255) tttCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCt > 2:506756/1‑91 (MQ=255) tCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAg < 1:1103359/91‑1 (MQ=255) cAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGa > 1:2327107/1‑91 (MQ=255) ttaaaTAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGaa > 2:1552297/3‑91 (MQ=255) aaaaaTAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGaa > 2:1725873/1‑91 (MQ=255) ttttaaaaCTAGCAATCTCACATGATGTTA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGATTGCATAGCTAGAAACtt > 2:1253179/5‑91 (MQ=255) tAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTc < 2:728359/91‑1 (MQ=255) aaaaaaCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCt > 1:634385/1‑91 (MQ=255) aaaaaCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTg > 2:2542461/1‑91 (MQ=255) aaaCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGaa > 2:3292100/1‑91 (MQ=255) aCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGc < 2:383311/91‑1 (MQ=255) aCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGc < 2:686093/91‑1 (MQ=255) aCTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGc < 2:383244/91‑1 (MQ=255) cTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCt < 1:93297/91‑1 (MQ=255) cTAGCAAT‑TCACATCATGTGAGATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCt > 1:2774914/1‑91 (MQ=37) tAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTg < 1:2267200/91‑1 (MQ=255) gCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACCATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGa > 2:3190963/1‑91 (MQ=255) gCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGa > 1:1323317/1‑91 (MQ=255) cAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGaa > 2:2264495/1‑91 (MQ=255) aaTCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGAAt > 1:3862193/1‑91 (MQ=255) ctcACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGAATTGt < 2:1755076/91‑1 (MQ=255) | ATACAAAATATAAATATGTATGATAGGGAAGGGTGAGATAATTTTTTGTACCAAAATGAAAATTTTTTTCAAAAATAAAAAACTAGCAATCTCACATGATGTGA‑ATTGCTAGTATATATCAGTACAATTTATTTAATTAATGGATGAATGCATAGCTAGAAACTTCTGAAGCTGGAATTGT > USA300TCH1516_ALE/740225‑740405 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |