| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,421,619 | Δ1 bp | 5.7% | intergenic (+55/+85) | pepF1_2 → / ← phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,421,619 | 0 | T | . | 5.7% | 777.3 / 34.9 | 229 | intergenic (+55/+85) | pepF1_2/phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Reads supporting (aligned to +/- strand): ref base T (109/107); new base . (7/6); total (116/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 233 total aligned reads displayed.
AAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTG > USA300TCH1516_ALE/1421529‑1421709 | aTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtg > 1:3435496/1‑91 (MQ=255) aTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtg > 1:2292093/1‑91 (MQ=255) ttAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgt > 1:1242757/1‑91 (MQ=255) ttAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgt < 2:2443959/91‑1 (MQ=255) tAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgtg < 2:3330748/91‑1 (MQ=255) aaCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTga > 1:3016727/1‑91 (MQ=255) aaCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTga > 1:254383/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag < 2:1313774/91‑1 (MQ=255) gATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAAt > 1:1261902/1‑91 (MQ=255) aTGAAATTGGGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATc < 1:3396927/91‑1 (MQ=255) aTGAAATTGAGCAAGCAAATAACTAGGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATc < 1:3600656/91‑1 (MQ=255) aTGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATc < 1:3799758/91‑1 (MQ=255) tGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCt < 2:1483849/91‑1 (MQ=255) tGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCt > 2:1426929/1‑91 (MQ=255) gAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCtt < 2:1206168/91‑1 (MQ=255) aaaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTg > 2:1181162/1‑91 (MQ=255) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg < 2:2560412/91‑1 (MQ=255) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg > 2:1162201/1‑91 (MQ=255) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg < 2:1569213/91‑1 (MQ=255) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg < 2:2021413/91‑1 (MQ=255) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg < 2:426081/91‑1 (MQ=255) aTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGt < 1:1392549/91‑1 (MQ=255) aTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGt > 1:1585678/1‑91 (MQ=255) aTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGt < 1:2001303/91‑1 (MQ=21) ttGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtt < 2:1059870/91‑1 (MQ=255) tGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttt > 1:2708730/1‑91 (MQ=255) tGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGttt < 1:2764566/91‑1 (MQ=18) gAGCAAGCAAATTACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttt > 1:2974723/1‑91 (MQ=255) gAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttt > 1:961022/1‑91 (MQ=255) gcaagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttttt < 2:742843/91‑1 (MQ=255) gcaagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttttt > 2:98825/1‑91 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 2:2654077/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 2:1716847/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 1:425936/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATAGAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 2:1685493/91‑1 (MQ=255) agcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGa > 1:656038/1‑91 (MQ=255) caaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAgg > 2:5843/1‑91 (MQ=255) caaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAgg > 2:2046154/1‑91 (MQ=255) caaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAgg < 1:755986/91‑1 (MQ=255) tAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGttt > 1:481916/1‑91 (MQ=255) aCTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTAt > 1:1319732/1‑91 (MQ=255) aCTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTAt < 2:2856201/91‑1 (MQ=255) cTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATg < 1:286554/91‑1 (MQ=255) aaGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaa < 1:2650486/91‑1 (MQ=255) aaGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaa < 2:7832/91‑1 (MQ=255) aaGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaa < 1:2911124/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGTTTTATGaat < 1:1955864/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:3236930/91‑1 (MQ=255) gATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaata > 1:1567740/1‑91 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa > 2:1052695/1‑91 (MQ=255) gCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAataata > 1:2599556/1‑91 (MQ=255) gCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAataata < 1:1450448/91‑1 (MQ=255) gaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaaa > 1:3695457/1‑91 (MQ=255) aCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAat > 2:918527/1‑91 (MQ=255) aCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAat < 1:352016/91‑1 (MQ=255) cAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAata > 1:2417407/1‑91 (MQ=255) aaTTTATAGTAGAACAGTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatat < 2:3704203/91‑1 (MQ=255) aaTTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatat > 2:3640783/1‑91 (MQ=255) tttATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatat < 1:222365/91‑1 (MQ=255) tttATAGTAGAACAATATAAACCAAGATTTTCAC‑ATCACTAATTGTGAGAATCATGGTTTTTTTGAGGGTTTATGAATAATAGAAatatat > 2:1250310/1‑91 (MQ=255) tataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatatat < 2:299389/91‑1 (MQ=255) ataGTAGAACAATATAAACCAAGATTTTCAC‑ATAACTGATTGTGAGCATCTTGGTTTTTCTGAGGGTTTATGAATAATAGAAATATATAtt > 1:3095873/1‑91 (MQ=255) tagtagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAttt > 2:2130272/1‑91 (MQ=255) tagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATc > 1:1970473/1‑91 (MQ=255) tagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATc > 1:3480152/1‑91 (MQ=255) gAACAATGTAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGt < 2:3456622/91‑1 (MQ=255) gAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGt < 2:1381486/91‑1 (MQ=255) aCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 1:3181104/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 1:2244618/91‑1 (MQ=255) atatAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAggg > 1:1911140/1‑91 (MQ=255) tataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGa < 1:2109694/91‑1 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTATATGAATAATAGAAATATATATTTATCGTAAGGGAt > 2:2691066/1‑91 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt < 2:2177965/91‑1 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt > 2:2092047/1‑91 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt < 1:2560467/91‑1 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt > 1:2511447/1‑91 (MQ=255) aaCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt > 1:770046/1‑91 (MQ=21) ccAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTtat > 1:2063291/1‑91 (MQ=255) aaGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAg < 2:1266983/91‑1 (MQ=255) aaGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAg > 2:2392057/1‑91 (MQ=21) aGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt > 1:824081/1‑91 (MQ=255) gATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGta > 2:949956/1‑91 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 2:3788036/91‑1 (MQ=255) tttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaata > 2:3687224/1‑91 (MQ=255) ttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaataa > 1:1686565/1‑91 (MQ=255) tCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAAc > 1:9006/1‑91 (MQ=255) tc‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGCTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt < 2:3842939/90‑1 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:1592152/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 2:3558765/1‑91 (MQ=255) c‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACttt < 1:981237/91‑1 (MQ=255) c‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtta < 2:2201414/91‑2 (MQ=255) aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACttaa < 1:918527/91‑3 (MQ=255) ttAGTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTaa < 1:3008246/91‑1 (MQ=255) ttACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTaa > 1:3024239/1‑91 (MQ=255) tAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTa > 2:3316871/1‑91 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTTTTTTTTTTTGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAt > 2:3800641/1‑91 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTATGTTAt > 2:664224/1‑91 (MQ=255) aTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTAAAGTTAtt < 1:1041243/91‑1 (MQ=255) ttGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTAAAGTTAtta < 2:3104357/91‑2 (MQ=255) ttGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTAAAGTTAtta < 2:2253618/91‑2 (MQ=255) | AAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTG > USA300TCH1516_ALE/1421529‑1421709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |