| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,133,485 | Δ1 bp | 6.3% | intergenic (+329/+43) | dapE → / ← USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,133,485 | 0 | C | . | 6.3% | 871.3 / 48.3 | 252 | intergenic (+329/+43) | dapE/USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (108/124); new base . (6/10); total (114/138) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.47e-01 | |||||||||||
Only 100 of 255 total aligned reads displayed.
TCGTAAAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTT > USA300TCH1516_ALE/2133395‑2133575 | cGTAAAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCa > 1:2250466/1‑91 (MQ=255) cGTAAAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCa > 2:2144863/1‑91 (MQ=255) cGTAAAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCa > 1:296843/1‑91 (MQ=255) ggaaaaGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACAATTGAAAAAAGCTGATTTCTATCaa < 2:3029892/89‑1 (MQ=255) aaaaGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAaat < 1:1187830/91‑1 (MQ=255) aaaaGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAaat < 1:1290353/91‑1 (MQ=255) gAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttg < 2:2609583/91‑2 (MQ=25) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata > 1:2082256/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttgata < 2:1681731/91‑5 (MQ=25) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 2:1335475/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 2:2945489/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 1:3666968/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 2:2836411/1‑91 (MQ=255) ggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGa < 1:2830459/91‑1 (MQ=25) gACATAAATCCCTAGAAAACAGCAGCTCAACGGGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTGCTATCAAATAATTT‑ATAGaa < 1:173126/91‑1 (MQ=255) gACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATAAAAATAAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGaa < 2:3423724/91‑1 (MQ=18) cATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAAt > 1:2443881/1‑91 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 1:2704389/91‑1 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 2:2909121/91‑1 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 2:3733886/91‑1 (MQ=255) tAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAACTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCa < 1:3084453/91‑1 (MQ=255) tAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGAAATCa < 1:1072447/91‑1 (MQ=21) cccTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttt < 1:1057015/91‑1 (MQ=255) cccTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttt > 2:1767039/1‑91 (MQ=255) cTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttttt < 2:3737003/91‑1 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:2582118/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:541878/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:520368/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc < 1:439338/91‑1 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGAAATCAGCttttttca < 1:573989/91‑3 (MQ=18) aaaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa > 2:2463937/1‑91 (MQ=255) aaaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa < 2:69777/91‑1 (MQ=255) aaaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa > 2:2465479/1‑91 (MQ=255) aaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACAt < 1:951531/91‑1 (MQ=255) aaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACAtt > 2:1265663/1‑91 (MQ=255) agcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTc < 2:149563/91‑1 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt < 1:406795/91‑1 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt < 2:1051521/91‑1 (MQ=255) agcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTaa < 2:170995/91‑1 (MQ=255) tCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGaa > 2:766463/1‑91 (MQ=255) tCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGaa > 1:715557/1‑91 (MQ=255) cgttgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc > 1:3219352/5‑91 (MQ=255) aaCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACt < 2:2413574/91‑1 (MQ=255) aaCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACt < 2:2292708/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt < 1:3835214/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt < 2:3688403/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt > 2:2385820/1‑91 (MQ=255) gAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTaa < 2:323502/91‑1 (MQ=255) gAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTaa > 2:3131883/1‑91 (MQ=255) gCTGTGAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtg > 2:900418/1‑91 (MQ=255) cTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgt > 2:264954/1‑91 (MQ=255) tGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtc > 2:2278207/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:423334/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 2:3495456/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc < 1:1891840/91‑1 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:2107530/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:3495161/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc < 1:629179/91‑1 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:3192811/1‑91 (MQ=255) aaaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctct > 2:2633642/1‑91 (MQ=255) aaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctg < 2:3618522/91‑1 (MQ=255) aTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgt < 2:1547691/91‑1 (MQ=255) ttATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtc < 2:520368/91‑1 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc < 2:18238/91‑1 (MQ=255) tctaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATgtctctgtctct < 2:3202742/88‑1 (MQ=255) tCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATgtctctgtctct < 2:3528000/91‑1 (MQ=255) aaaTACATTTGAAAAAAGCTGCTTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 2:572847/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:1009539/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:2114545/1‑91 (MQ=255) aaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTg < 2:1195822/91‑1 (MQ=255) agaCATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTgg < 1:882012/89‑1 (MQ=255) cATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAAc < 1:37484/91‑1 (MQ=255) cATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAAc < 1:2886030/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:240474/1‑91 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:2766650/1‑91 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt < 2:165138/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt < 2:1942712/91‑1 (MQ=255) tttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACtt < 1:1569996/91‑1 (MQ=255) ttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACttt < 1:185453/91‑1 (MQ=255) ttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACttt < 1:2048975/91‑1 (MQ=255) gAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtat < 2:75187/91‑1 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata < 1:254664/91‑1 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata < 1:3588707/91‑1 (MQ=255) aaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAAATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTc > 2:2989116/1‑91 (MQ=255) aGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTACATTTCa > 2:3876806/1‑91 (MQ=255) cTGATTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTACGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATa > 2:3408098/1‑91 (MQ=21) gATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAg > 2:1573353/1‑91 (MQ=255) aTTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt < 1:36560/91‑1 (MQ=255) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTTGAACTTTATATTTCATAAGt > 2:2770791/1‑91 (MQ=21) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt > 2:205267/1‑91 (MQ=25) tttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTa > 1:3234242/1‑91 (MQ=255) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc > 2:1986099/1‑91 (MQ=255) tCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACt < 1:959795/91‑1 (MQ=255) tCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACt < 1:3319521/91‑1 (MQ=255) tCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCACAAGTACt > 2:3459578/1‑91 (MQ=255) cTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTa < 2:602709/91‑1 (MQ=255) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 1:238551/91‑1 (MQ=255) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 2:3793273/91‑1 (MQ=255) aTCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAtt > 1:3039062/1‑91 (MQ=255) cAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATCAGTACTCtttt > 1:1286645/1‑91 (MQ=255) | TCGTAAAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTT > USA300TCH1516_ALE/2133395‑2133575 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |