| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,133,494:1 | +G | 5.6% | intergenic (+338/+34) | dapE → / ← USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,133,494 | 1 | . | G | 5.6% | 1017.3 / 52.4 | 232 | intergenic (+338/+34) | dapE/USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (95/124); new base G (6/7); total (101/131) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.47e-01 | |||||||||||
Only 100 of 251 total aligned reads displayed.
GAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGTTTA > USA300TCH1516_ALE/2133404‑2133583 | gAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttg < 2:2609583/91‑2 (MQ=25) aTGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑at > 1:3178463/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata < 1:470024/91‑1 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑ata > 2:2315818/1‑91 (MQ=255) tGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttgata < 2:1681813/91‑5 (MQ=25) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAGATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 1:3357201/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg < 1:1583288/91‑1 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 1:3666968/1‑91 (MQ=255) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg < 2:3429259/91‑1 (MQ=255) ggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGa > 1:3078014/1‑91 (MQ=255) ggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGa < 1:2830459/91‑1 (MQ=25) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 2:3733886/91‑1 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATc < 2:2909179/91‑1 (MQ=255) tAAATCCCTAGAAAACAGCAGCTCAACGCGCTGTAAATTATCAAATACATGTGAAAAAAGCTGATTTCTATAAATTATTTG‑ATAGAAATCa < 2:759044/91‑1 (MQ=18) tAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCa < 1:2075154/91‑1 (MQ=255) aTCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCt < 2:3198352/91‑1 (MQ=255) cccTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttt > 2:2245210/1‑91 (MQ=255) cccTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttt > 2:1767435/1‑91 (MQ=255) ccTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCtttt > 1:2330525/1‑91 (MQ=255) cTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttttt < 2:1033846/91‑1 (MQ=255) cTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCttttt < 1:943195/91‑1 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:541878/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc < 1:439338/91‑1 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:3220583/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:2169807/1‑91 (MQ=255) aaaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa > 2:2463937/1‑91 (MQ=255) aaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACAtt > 2:1265663/1‑91 (MQ=255) cagcagCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGt < 2:3516526/91‑1 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt < 1:406795/91‑1 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt > 1:186584/1‑91 (MQ=255) agcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTaa < 2:3734502/91‑1 (MQ=255) cgttgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc > 1:1969553/5‑91 (MQ=255) gttgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACt > 1:2927498/4‑91 (MQ=255) aaCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACt < 1:2102329/91‑1 (MQ=255) aaCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACt < 2:2292708/91‑1 (MQ=255) aaCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACt < 2:2413574/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt < 1:3835214/91‑1 (MQ=255) cGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc < 2:1749743/88‑1 (MQ=255) cGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc > 1:1749743/1‑88 (MQ=255) gAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTaa < 2:323502/91‑1 (MQ=255) gAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTaa > 2:3131883/1‑91 (MQ=255) cTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgt > 2:264954/1‑91 (MQ=255) cTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgt > 2:686339/1‑91 (MQ=255) tGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtc < 1:1057984/91‑1 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 2:573536/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc < 1:629179/91‑1 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 2:3495456/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:2109988/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 2:2802889/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc > 1:423334/1‑91 (MQ=255) aaaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctct < 2:1969553/91‑1 (MQ=255) aaaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctct > 2:2633642/1‑91 (MQ=255) aaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctg < 2:3618522/91‑1 (MQ=255) ttATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtc < 2:520368/91‑1 (MQ=255) tATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtct < 2:2110324/91‑1 (MQ=255) tATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtct > 2:853785/1‑91 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc < 2:18238/91‑1 (MQ=255) tCAAATACATTTGAAAAAAGCTGACTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATgtctctgtctct < 2:1515520/91‑1 (MQ=255) cAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCtt < 1:3293856/91‑1 (MQ=255) cAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCtt > 2:3628603/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt < 1:573536/91‑1 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:1009539/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:1541994/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:3207414/1‑91 (MQ=255) aaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTg < 2:1195822/91‑1 (MQ=255) agaCATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTgg < 1:882012/89‑1 (MQ=255) cATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAAc < 2:342243/91‑1 (MQ=255) cATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAAc < 1:37484/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:2769213/1‑91 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt < 2:165138/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:240474/1‑91 (MQ=255) tttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACtt < 1:2689938/91‑1 (MQ=255) gAAAAAAGCTGATTTCGATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGCACTTAATGTCTCTGTCTCTTTGGAACTTtat < 2:2970464/91‑1 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata > 1:1283234/1‑91 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata < 1:3588707/91‑1 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata < 1:254664/91‑1 (MQ=255) aaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTatat > 1:24424/1‑91 (MQ=255) aGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTACATTTCa > 2:3876806/1‑91 (MQ=255) gATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAg > 2:1573353/1‑91 (MQ=255) gATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCAGAAg > 1:3009726/1‑91 (MQ=255) aTTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt < 1:36560/91‑1 (MQ=255) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTTGAACTTTATATTTCATAAGt > 2:2770791/1‑91 (MQ=21) aTTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt > 2:1408046/1‑91 (MQ=25) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc > 1:685357/1‑91 (MQ=255) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc < 1:2573783/91‑1 (MQ=255) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc > 2:3010623/1‑91 (MQ=255) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc > 2:1986155/1‑91 (MQ=255) tCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACt < 1:959795/91‑1 (MQ=255) cTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTa > 2:2874945/1‑91 (MQ=255) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 2:911465/91‑1 (MQ=255) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 2:3793273/91‑1 (MQ=255) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 2:2510077/91‑1 (MQ=255) aTCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAtt < 2:712461/91‑1 (MQ=255) cAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATCAGTACTCtttt > 1:1286645/1‑91 (MQ=255) taatTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTg < 2:186584/91‑1 (MQ=255) atTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGtt > 1:3520084/1‑91 (MQ=255) atTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGtt > 2:1099911/1‑91 (MQ=255) atTT‑ATAGAAATCAGCTTTTTTACATCGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGtt < 2:3357201/91‑1 (MQ=255) tt‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGTTTa > 1:2722227/1‑91 (MQ=255) tt‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGTTTa < 2:1294751/91‑1 (MQ=255) | GAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGTTTA > USA300TCH1516_ALE/2133404‑2133583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |