| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,430,691:1 | +A | 7.5% | intergenic (‑115/‑270) | suhB_2 ← / → birA_2 | Inositol‑1‑monophosphatase/Bifunctional ligase/repressor BirA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,430,691 | 1 | . | A | 7.5% | 888.5 / 65.5 | 226 | intergenic (‑115/‑270) | suhB_2/birA_2 | Inositol‑1‑monophosphatase/Bifunctional ligase/repressor BirA |
| Reads supporting (aligned to +/- strand): ref base . (113/96); new base A (9/8); total (122/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 242 total aligned reads displayed.
TTATCATTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGCT > USA300TCH1516_ALE/2430600‑2430781 | ttatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAG‑CACGTg < 1:3849179/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTg < 2:1843507/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAG‑CACGTga < 2:651959/91‑2 (MQ=255) atcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑c > 1:3050234/1‑91 (MQ=255) atcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑c > 2:1262397/1‑91 (MQ=255) atcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAG‑CACGTgac < 1:3659493/91‑3 (MQ=255) ttttATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGc > 1:2821732/1‑91 (MQ=255) ttgattattaGCCTATATTAAGAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAG‑CACGTGACTAGcc < 2:748180/88‑1 (MQ=255) tattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGa < 1:103796/91‑1 (MQ=255) tattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAG‑CACGTGACTAGCCGa < 1:1265052/91‑1 (MQ=255) attattgCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAG‑CACGTGACTAGCCGat < 1:231658/91‑2 (MQ=38) attattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGAc < 2:3661594/91‑1 (MQ=255) attattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGAc < 1:344804/91‑1 (MQ=255) attaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACaaa < 2:2176677/91‑1 (MQ=255) taCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATa < 1:3174580/91‑1 (MQ=255) ccTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaa < 1:2035771/91‑1 (MQ=255) cTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaa > 1:3743079/1‑91 (MQ=255) tataTTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaag < 1:312954/91‑1 (MQ=255) atatTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaagg > 2:2637587/1‑91 (MQ=255) atTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaa > 1:2422812/1‑91 (MQ=255) atTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaa < 2:1396284/91‑1 (MQ=255) ttAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaa > 1:1080994/1‑91 (MQ=255) aaaaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagt < 2:782788/91‑1 (MQ=255) aaaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagta > 2:850010/1‑91 (MQ=255) aGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtaag > 1:3422963/1‑91 (MQ=255) aGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtaag > 2:1043204/1‑91 (MQ=255) aGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtaag > 1:2966018/1‑91 (MQ=255) aTCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAgtaagtaa < 2:2115391/91‑1 (MQ=255) aTCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAgtaagtaa > 1:1907081/1‑91 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat < 1:3426434/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAACtaata > 2:3570567/1‑91 (MQ=255) aacaaTACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaataa > 2:1122752/1‑91 (MQ=255) acaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaataa > 1:1893380/1‑91 (MQ=255) acaaTACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTaataaa > 1:161724/1‑91 (MQ=255) acaaTACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTaataaa > 2:1193528/1‑91 (MQ=255) acaaTACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTaataaa > 2:619975/1‑91 (MQ=255) aaTACAACTGAAGACTTCTTCATTTTATGCAT‑ACAAATATCGGCTACTCACGTG‑CTAGCAGACAAATAGAAAGGAAAGTAAGTaataaata > 1:3097988/1‑91 (MQ=255) aaTACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTaataaata > 1:1051865/1‑91 (MQ=255) aCAACTGAAGAGTTCTTCATTTTTTGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGAGAAATAGAAAGGAAAGTAAGTAATAAATATTg < 2:2962777/91‑1 (MQ=255) aCAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTg < 2:20516/91‑1 (MQ=255) aCAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTg > 2:1880140/1‑91 (MQ=255) aCAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTg > 2:33389/1‑91 (MQ=255) aCAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTg < 2:3306767/91‑1 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa < 2:3726526/91‑1 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa < 1:2494738/91‑1 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa > 2:44192/1‑91 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa < 2:1621682/91‑1 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa < 1:2442315/91‑1 (MQ=255) aCTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg > 2:2918238/1‑91 (MQ=255) aCTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg > 2:1946788/1‑91 (MQ=255) aCTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg < 1:3392509/91‑1 (MQ=255) cTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGa < 2:1509047/91‑1 (MQ=255) cTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGa < 2:2334735/91‑1 (MQ=255) tGACGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATACTGAAGAt > 2:3445565/1‑91 (MQ=255) gAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtg > 1:625393/1‑91 (MQ=255) aGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtgtt < 1:2414751/91‑1 (MQ=255) cttcttCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTtgtg > 1:1642779/1‑91 (MQ=255) cttcATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATg < 2:3776444/91‑1 (MQ=255) ttcATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGt < 2:2742768/91‑1 (MQ=255) tcATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTa > 2:1534799/1‑91 (MQ=255) ttATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAACGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTg > 1:3880599/1‑91 (MQ=255) ttATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTg > 2:2135712/1‑91 (MQ=255) ttATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTg < 1:2079170/91‑1 (MQ=255) tATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGa < 1:1016688/91‑1 (MQ=255) tATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGa < 1:1357127/91‑1 (MQ=255) aTGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGaa > 1:3295075/1‑91 (MQ=255) aTGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGaa < 2:3321926/91‑1 (MQ=255) tGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 1:937405/91‑1 (MQ=255) tGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 1:2629380/91‑1 (MQ=255) tGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc > 1:576489/1‑91 (MQ=255) tGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCAACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc > 2:2522743/1‑91 (MQ=255) cAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGa > 1:3557162/1‑91 (MQ=255) t‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATTTTGAAGATGTTGTGATGTAACTTGAACGAtt > 1:586374/1‑91 (MQ=255) t‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGAtt < 1:1780950/91‑1 (MQ=255) aaaaaaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTa > 1:3204051/1‑91 (MQ=255) aaaaaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTaa < 1:3336853/91‑1 (MQ=255) aaaaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTaaa < 2:2737928/91‑1 (MQ=255) aaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAg < 2:3537545/91‑1 (MQ=255) aaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGc > 1:1224799/1‑91 (MQ=255) aaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGc < 1:2681369/91‑1 (MQ=255) aaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGc < 1:66537/91‑1 (MQ=255) aTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCt > 1:701597/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 2:1461238/1‑91 (MQ=255) tCGGCTAG‑CACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 2:3087634/1‑91 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAGGCTAt > 1:2454672/1‑91 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt < 1:836596/91‑1 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt < 2:3590081/91‑1 (MQ=255) ggCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAAc < 2:302178/71‑1 (MQ=255) ggCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATc > 2:484698/1‑91 (MQ=255) ggCTAG‑CACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATc > 1:866165/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 2:1719050/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 2:3803759/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 2:3803615/1‑91 (MQ=255) aGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGtt > 1:1032900/1‑91 (MQ=255) gcACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTta > 1:2118704/2‑91 (MQ=255) cACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtat > 2:2659865/1‑91 (MQ=255) aCGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtatat < 1:3455450/91‑1 (MQ=255) gcg‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAg < 1:966/89‑1 (MQ=255) gTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAg > 2:2497437/1‑91 (MQ=255) g‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGct < 2:1814968/91‑1 (MQ=255) | TTATCATTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGCT > USA300TCH1516_ALE/2430600‑2430781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |