| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1838263 | 188 (0.990) | 17 (0.100) | 9/140 | NT | 8.7% | intergenic (‑67/+40) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 1838279 | 193 (1.160) | intergenic (‑83/+24) | gph_2/nagE | Phosphoglycolate phosphatase/PTS system N‑acetylglucosamine‑specific EIICBA component | |||||
AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1838164‑1838263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcaaaTCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < USA300TCH1516_ALE/1838279‑1838190 AACGCCATCCCCATCAAACAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGTCTAAAAA > 2:1712612/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 2:83064/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 1:2146379/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA > 2:1711780/1‑91AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAA < 1:267621/91‑1 ACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAA > 1:2768731/1‑91 ACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAA > 1:2768635/1‑91 ACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAA > 1:2768442/1‑91 ACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAA > 1:739089/1‑91 ACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCCGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAA < 1:186582/91‑1 GCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAG > 1:1058312/1‑91 GCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAG > 1:698661/1‑91 GCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAG > 1:698751/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 2:109312/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 1:745363/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 1:98504/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 2:144737/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 2:3101203/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 2:3756946/1‑91 CCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCCGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGC > 1:3077432/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 1:712348/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG < 2:1230218/91‑1 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 2:602798/1‑91 CATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCG > 1:537796/1‑91 ATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC > 1:106984/1‑91 ATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGC < 1:1749603/91‑1 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA > 2:840384/1‑91 CAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAA > 2:3784508/1‑91 AACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA < 2:1306842/91‑1 TCTTCACAATCCCCACTCCATTTCTGAAAGTTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGT < 1:2159320/91‑1 TTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTT < 2:3467350/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 2:1442114/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 2:1441911/91‑1 TCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTG < 2:1442732/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:1349341/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:2633584/91‑1 CACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGC < 1:1731576/91‑1 ACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCG < 2:1587477/91‑1 ACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCG < 2:587982/91‑1 CAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGC < 2:355252/91‑1 CAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGC < 1:329643/91‑1 CAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTGCAATAGGGTTTGCGC < 1:3312530/91‑1 AATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCT < 1:2240275/91‑1 ATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTT < 1:2600895/91‑1 ATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTT < 2:1422953/91‑1 ATCATTCTACTATTTGACTAAAAAAAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTG < 1:1078402/91‑1 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 1:3211694/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 2:3229220/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 1:2257865/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT > 2:1058312/1‑91 AAGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGAT < 1:91986/91‑1 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT < 1:2331389/91‑1 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT > 2:62129/1‑91 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT < 2:1924043/91‑1 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT > 2:2311532/1‑91 AGCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATT > 2:2312221/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG > 1:2929274/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG < 2:793460/91‑1 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG > 1:3755282/1‑91 GCGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTG < 1:3432973/91‑1 CGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGT > 1:2495916/1‑91 CGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGT < 1:252922/91‑1 CGCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGT < 2:759225/91‑1 GCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTG > 2:865939/1‑91 GCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTG < 2:1895670/91‑1 GCAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTG < 2:2665737/91‑1 CAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGA < 1:530170/91‑1 CAAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGA < 1:905210/91‑1 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA < 2:473405/91‑1 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA > 1:571869/1‑91 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA > 1:786002/1‑91 AAATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAA < 2:1414942/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG > 2:1244106/1‑91 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:781595/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:278728/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:2872945/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:426046/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:3277771/91‑1 AATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAG < 1:3277549/91‑1 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA > 1:1527696/1‑91 ATCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA > 2:3118339/1‑91 AACGCCATCAACATCAAATAAAATTTTCTTCACAATCCCCACTCCATTTCTGAAAATTCAGATATAAATCATTCTACTATTTGACTAAAAAAAGCGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1838164‑1838263‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcaaaTCTAACTTCAATAGGGTTTGCGCTTTTTTTAGTCAAATAGTAGAATGATTTATATCTGAATTTTCAGAAATGGAGTGGGGATTGTGAAGA < USA300TCH1516_ALE/1838279‑1838190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |