BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 22941	475 (0.850)	23 (0.050)	13/146	NT	5.0%	coding (1398/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter
*	?	CP000731	= 22955	440 (0.870)	23 (0.050)	13/146	NT	5.0%	coding (1412/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter

Only 100 of 687 total aligned reads displayed.

AACTAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATAT  >  CP000731/22851‑23031

 aCTAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACaa                                                                                           >  2:1287787/1‑91 (MQ=255)

 aCTAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACA                                                                                            <  1:1396104‑M1/90‑1 (MQ=255)

  cTAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAg                                                                                          >  1:2964182/1‑91 (MQ=255)

   tAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAgg                                                                                         <  1:1041893/91‑1 (MQ=255)

   tAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAgg                                                                                         <  1:3772532/91‑1 (MQ=255)

   tAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAgg                                                                                         <  1:1878352/91‑1 (MQ=255)

   tAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAgg                                                                                         <  1:1318964/91‑1 (MQ=255)

   tAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAgg                                                                                         <  2:3249426/91‑1 (MQ=255)

    aaTTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGt                                                                                        <  1:2825360/91‑1 (MQ=255)

    aaTTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGt                                                                                        <  2:2139817/91‑1 (MQ=255)

      ttttttAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGttt                                                                                      >  2:1320523/1‑91 (MQ=255)

      ttttttAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGttt                                                                                      <  1:556508/91‑1 (MQ=255)

        ttttAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGt                                                                                    <  1:1605949/91‑1 (MQ=255)

        ttttAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGt                                                                                    <  1:3363528/91‑1 (MQ=255)

           ttgATATTAAAACATTAGAAGCATTAGTAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTaa                                                                                 <  2:704515/89‑1 (MQ=255)

           tAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTaa                                                                                 <  2:1939335/91‑1 (MQ=255)

            tcaatataaattagtgtatagtttttaagttatatcatgaagagattgtcctgttaattcccattttttatcTGATACAAGGTTTGTTaaa                                                                                >  1:1017385‑M1/73‑91 (MQ=255)

            aGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTaaa                                                                                >  1:3310525/1‑91 (MQ=255)

            aGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTaaa                                                                                <  2:3049077/91‑1 (MQ=255)

              atatTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAtgtttaacaaacct                                                                              <  1:1463799‑M1/91‑15 (MQ=255)

               tatTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACAt                                                                             <  1:908790‑M2/91‑2 (MQ=255)

                 ttAAAACATTAGAAGCATTAGAAATGTTTATGAATAGATATCCTGGAATCATTTTGTTTACATCACATGATACAtgtttaacaaaccttgt                                                                           <  2:1623454‑M1/91‑18 (MQ=255)

                 ataaattagtgtatagtttttaagttatatcatgaagagattgtcctgttaattcccattttttatcTGATACAAGGTTTGTTAAACATGt                                                                           >  2:3647627‑M1/68‑91 (MQ=255)

                  tAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAtgtttaacaaaccttgta                                                                          <  1:1978516‑M1/91‑19 (MQ=255)

                    aaaCATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACAtgtatc                                                                        >  2:2833508‑M2/1‑85 (MQ=255)

                      aCATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAg                                                                      >  1:2572567/1‑91 (MQ=255)

                       cATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGa                                                                     <  2:2081426/91‑1 (MQ=255)

                       cATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGa                                                                     <  1:168284/91‑1 (MQ=255)

                       cATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGa                                                                     <  1:1062618/91‑1 (MQ=255)

                        aTTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGAt                                                                    >  2:2384966/1‑91 (MQ=255)

                        aTTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGAt                                                                    <  1:504708/91‑1 (MQ=255)

                         ttAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAtgtttaacaaaccttgtatcatgtg                                                                   <  2:2224722‑M1/91‑26 (MQ=255)

                         ttAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATa                                                                   <  1:2435897/91‑1 (MQ=255)

                          tAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaa                                                                  >  2:1872028/1‑91 (MQ=255)

                           aGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaa                                                                 >  1:1797310/1‑91 (MQ=255)

                           aGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaa                                                                 <  1:2368048/91‑1 (MQ=255)

                            gAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAtggttaacaaaccttgtatcatgtgatg                                                                <  2:2532968‑M1/91‑29 (MQ=255)

                            gAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaaa                                                                >  2:1047638/1‑91 (MQ=255)

                             aaGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaaaa                                                               >  2:3325198/1‑91 (MQ=255)

                              aGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaaaaa                                                              >  1:1134025/1‑91 (MQ=255)

                               gCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAAt                                                             <  1:2804042/91‑1 (MQ=255)

                                cATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATg                                                            <  2:3728984/91‑1 (MQ=255)

                                 aTTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATgg                                                           <  1:2455267/91‑1 (MQ=255)

                                  ttAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATggg                                                          <  2:770092/91‑1 (MQ=255)

                                  ttAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATggg                                                          <  2:650804/91‑1 (MQ=255)

                                   tAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGa                                                         <  2:2586718/91‑1 (MQ=255)

                                    aGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGTTACAAGGTTTGTTAAACATATATCAGATAAAAAATGGGaa                                                        >  2:397502/1‑91 (MQ=255)

                                    aGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGaa                                                        <  2:2046798/91‑1 (MQ=255)

                                        aTGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTaa                                                    >  1:1236039/1‑91 (MQ=255)

                                        aTGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATATATCAGATAAAAAATGGGAATTaa                                                    <  2:1478798/91‑1 (MQ=255)

                                         tGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaa                                                                 <  2:3446231/77‑1 (MQ=255)

                                         tGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAAc                                                   <  1:617030/91‑1 (MQ=255)

                                         tGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAAc                                                   <  1:3511777/91‑1 (MQ=255)

                                         tGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAAc                                                   <  2:888317/91‑1 (MQ=255)

                                           tttATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAg                                                 <  1:3732290/91‑1 (MQ=255)

                                           atatcatgaagagattgtcctgttaattcccattttttatcTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAg                                                 >  1:2881993‑M1/42‑91 (MQ=255)

                                              aTGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGAc                                              >  2:1650930/1‑91 (MQ=255)

                                               tGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACa                                             >  1:3561004/1‑91 (MQ=255)

                                                gAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACaa                                            <  1:3194647/91‑1 (MQ=255)

                                                 aataaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAt                                           <  2:320994/91‑1 (MQ=255)

                                                 aataaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAt                                           <  2:1194500/91‑1 (MQ=255)

                                                  ataaataTCCTGGAATCATTTTGTTTACATCACGTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtc                                          <  1:3444426/91‑1 (MQ=255)

                                                  ataaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtc                                          <  1:261590/91‑1 (MQ=255)

                                                   taaataTCCTGGAATCATTTTGTTTACATCACATGATCCAAGGTTTGTTAACCATGTATCAGATATAAAATGGGAATTAACAGGACAAtct                                         >  1:3614049/1‑91 (MQ=255)

                                                   taaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtct                                         <  1:797715/91‑1 (MQ=255)

                                                      atatCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCtt                                      >  2:1351802/1‑91 (MQ=255)

                                                       tatCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTc                                     >  2:944249/1‑91 (MQ=255)

                                                        atCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGAc                                              <  2:2710828/81‑1 (MQ=255)

                                                           cTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGa                                 <  1:1264575/91‑1 (MQ=255)

                                                            tGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGat                                <  1:3071593/91‑1 (MQ=255)

                                                            tGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGat                                <  1:2769815/91‑1 (MQ=255)

                                                             ggAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGata                               >  2:2330184/1‑91 (MQ=255)

                                                             ggAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGata                               <  2:1231209/91‑1 (MQ=255)

                                                             ggAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGata                               >  1:450094/1‑91 (MQ=255)

                                                             ggAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGata                               <  2:2898364/91‑1 (MQ=255)

                                                               aaTCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGAtata                             >  2:1097147/1‑91 (MQ=255)

                                                                gtCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATaa                            <  1:693054/90‑1 (MQ=255)

                                                                 tCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAGTTAACAGGATAATCTCTTCATGATATAAc                           <  2:3388447/91‑1 (MQ=255)

                                                                  cATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATATATAAAATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACt                          <  2:1809857/91‑1 (MQ=255)

                                                                      ttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTaaa                      >  1:2018042/1‑91 (MQ=255)

                                                                         tttACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAAc                   <  1:321921/91‑1 (MQ=255)

                                                                           tACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACta                 <  1:3829362/91‑1 (MQ=255)

                                                                            aCATCACATGATACAAGGTTTGTTAAACAtgtatcatgtgatgtaaacaaaatgattccaggatatttattcataaacatttctaatgctt                <  1:2332746‑M2/91‑63 (MQ=255)

                                                                            aCATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAATAATGGGAATTAACAGTACAATCTCTTCATCATATAACTTAAAACCtat                <  1:1351401/91‑1 (MQ=255)

                                                                             cATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACtata               <  2:1749672/91‑1 (MQ=255)

                                                                             cATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACtata               <  2:84813/91‑1 (MQ=255)

                                                                             cATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACtata               <  1:2670533/91‑1 (MQ=255)

                                                                                 acaTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACt           >  1:3165254/1‑91 (MQ=255)

                                                                                  caTGATACAAGGTTTGTTAAACAtgtatcatgtgatgtaaacaaaatgattccaggatacttattcataaacatttctaatgcttctaatg          <  2:2452171‑M2/91‑69 (MQ=255)

                                                                                  caTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTa          <  2:4490/91‑1 (MQ=255)

                                                                                   aTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTaa         <  1:2290282/91‑1 (MQ=255)

                                                                                    TGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAAt        <  1:2205170‑M1/91‑1 (MQ=255)

                                                                                       TACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTta     <  2:3774388‑M1/91‑1 (MQ=255)

                                                                                       TACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTta     <  2:5317‑M1/91‑1 (MQ=255)

                                                                                       TACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTta     <  1:2479134‑M1/91‑1 (MQ=255)

                                                                                       TACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTta     <  2:1401776‑M1/91‑1 (MQ=255)

                                                                                        aCAtgtttaacaaaccttgtatcatgtgatgtaaacaaaatgattccaggatatttattcataaacatttctaatgcttctaatgttttaa    >  2:3574797‑M1/1‑3 (MQ=255)

                                                                                         CAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTtata   <  2:2783815‑M1/91‑1 (MQ=255)

                                                                                         CAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTtata   <  1:292521‑M1/91‑1 (MQ=255)

                                                                                          AAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTatat  >  1:93621‑M1/1‑91 (MQ=255)

AACTAATTTTTTAGATATTAAAACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATAT  >  CP000731/22851‑23031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.