BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2148	7684 (0.640)	417 (0.040)	29/148	NT	5.5%	coding (527/582 nt)	USA300HOU_RS14900	hypothetical protein
*	?	NC_012417	= 2154	7365 (0.670)	417 (0.040)	29/148	NT	5.5%	coding (521/582 nt)	USA300HOU_RS14900	hypothetical protein

Only 100 of 15174 total aligned reads displayed.

CTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGC  >  NC_012417/2058‑2239

cTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTG                                                                                             >  2:1991916‑M1/1‑91 (MQ=255)

atcacagcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTg                                                                                             >  2:3722759‑M1/86‑91 (MQ=255)

 tCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGc                                                                                            >  1:2663892/1‑91 (MQ=255)

  cAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCg                                                                                           <  2:3792814/91‑1 (MQ=255)

  cAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCg                                                                                           <  1:1968618/91‑1 (MQ=255)

     cGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGAtt                                                                                        >  2:3245037/1‑91 (MQ=255)

     agcagtttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTGCGAtt                                                                                        >  1:487254‑M1/81‑91 (MQ=255)

      gcagtttttgaagatgttaaagccaaaaacttaaaggtcgtaccaaaaaaattagctaaaattgggataaaaggaatccTAGCTGCGATTc                                                                                       >  2:1559525‑M1/80‑91 (MQ=255)

       tCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGgaatcgc                                                                                      <  2:2356747‑M1/91‑8 (MQ=255)

        CAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCa                                                                                     >  2:2617751‑M2/1‑91 (MQ=255)

        CAATAAAGCAATTGGAATAAATAGTAGCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCa                                                                                     >  2:2207707‑M2/1‑91 (MQ=255)

          tttttgaagatgttaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaattgggataaaaggaaaccTAGCTGCGATTCCAGc                                                                                   >  1:3553369‑M1/76‑91 (MQ=255)

          ATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGc                                                                                   <  1:923029‑M2/91‑1 (MQ=255)

           ttgtgtagatgtgaaagccaaaaacttaaagggcgtagcaaaaaaattagctaaaagtgggataaaaggaaaccTAGCTGCGATTCCAGCt                                                                                  >  2:3569469‑M1/75‑91 (MQ=255)

           TAAAGCAATTGGAATAAATAGTATCTAAAGTCACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCt                                                                                  >  2:2962253‑M2/1‑91 (MQ=255)

           TAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCt                                                                                  <  1:776154‑M2/91‑1 (MQ=255)

            AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                                 >  2:2421618‑M2/1‑91 (MQ=255)

            AAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTa                                                                                 >  2:127848‑M2/1‑91 (MQ=255)

             AAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAg                                                                                <  1:3044135‑M2/91‑1 (MQ=255)

             AAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAg                                                                                >  1:1623347‑M2/1‑91 (MQ=255)

             AAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAg                                                                                <  1:1276627‑M2/91‑1 (MQ=255)

              AGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAgg                                                                               >  1:1691038‑M2/1‑91 (MQ=255)

              AGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAgg                                                                               <  2:1425780‑M2/91‑1 (MQ=255)

              AGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAgg                                                                               <  2:317388‑M2/91‑1 (MQ=255)

                 aaTTGGAATAGATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCATTCGAAACCATAGTAGCTGCGATTCCAGCTAGGttt                                                                            >  2:3503464/1‑91 (MQ=255)

                 aaTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGttt                                                                            >  1:623740/1‑91 (MQ=255)

                  aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTc                                                                           <  1:2399060/91‑1 (MQ=255)

                  aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTc                                                                           >  1:1766913/1‑91 (MQ=255)

                  aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTc                                                                           >  1:3842753/1‑91 (MQ=255)

                  aTTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTc                                                                           <  2:566054/91‑1 (MQ=255)

                    tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCt                                                                         >  1:1136172/1‑91 (MQ=255)

                    tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCt                                                                         >  1:2596724/1‑91 (MQ=255)

                    tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCt                                                                         >  1:2253811/1‑91 (MQ=255)

                    tGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCt                                                                         >  1:2473347/1‑91 (MQ=255)

                       aataaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCtttt                                                                      <  2:3310099/91‑1 (MQ=255)

                         taaataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTAt                                                                    <  2:1621368/91‑1 (MQ=255)

                            ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATccc                                                                 >  1:1069220/1‑91 (MQ=255)

                            ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATccc                                                                 >  2:444052/1‑91 (MQ=255)

                            ataGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATccc                                                                 <  1:363155/91‑1 (MQ=255)

                              aGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCaa                                                               <  1:1204046/91‑1 (MQ=255)

                                 aTCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAttt                                                            <  2:645245/91‑1 (MQ=255)

                                  tCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAAtttt                                                           >  1:2533934/1‑91 (MQ=255)

                                    tAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAg                                                         <  1:2961103/91‑1 (MQ=255)

                                     aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                        >  1:1000057/1‑91 (MQ=255)

                                     aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                        <  2:3110358/91‑1 (MQ=255)

                                     aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                        >  1:1546574/1‑91 (MQ=255)

                                     aaaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGc                                                        >  2:508049/1‑91 (MQ=255)

                                      aaGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCGTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCt                                                       <  2:2484783/91‑1 (MQ=255)

                                        gTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTaa                                                     <  2:3867242/91‑1 (MQ=255)

                                              cGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAtttttt                                               <  1:995893/91‑1 (MQ=255)

                                               gTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAAttttttt                                              <  1:3199204/91‑1 (MQ=255)

                                                 aTTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGc                                            <  1:56056/91‑1 (MQ=255)

                                                 aTTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGc                                            >  1:3765144/1‑91 (MQ=255)

                                                    tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                         >  2:2896638/1‑91 (MQ=255)

                                                    tAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTAc                                         <  2:1811615/91‑1 (MQ=255)

                                                      aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                       >  2:1143012/1‑91 (MQ=255)

                                                      aGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGc                                       >  2:1217130/1‑91 (MQ=255)

                                                        aTTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGccc                                     >  2:927447/1‑91 (MQ=255)

                                                        aTTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGccc                                     >  1:3122809/1‑91 (MQ=255)

                                                         ttACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCt                                    <  2:1865933/91‑1 (MQ=255)

                                                         ttACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCt                                    <  1:1420436/91‑1 (MQ=255)

                                                          tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                                   <  2:1068018/91‑1 (MQ=255)

                                                          tACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCtt                                   <  1:413442/91‑1 (MQ=255)

                                                           aCATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCttt                                  <  1:2174934/91‑1 (MQ=255)

                                                             aTTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAA                                <  1:2812864‑M1/91‑1 (MQ=255)

                                                              ttGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAG                               >  2:85721‑M1/1‑91 (MQ=255)

                                                                gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                             >  2:1746841‑M1/1‑91 (MQ=255)

                                                                gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                             <  2:3433066‑M1/91‑1 (MQ=255)

                                                                gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                             <  1:3333574‑M1/91‑1 (MQ=255)

                                                                gTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTT                             <  1:2040621‑M1/91‑1 (MQ=255)

                                                                  aCATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTa                                                      <  2:228787/64‑1 (MQ=255)

                                                                  aCATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                           >  2:1677495‑M1/1‑91 (MQ=255)

                                                                  aCATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                           >  2:365292‑M1/1‑91 (MQ=255)

                                                                  aCATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTT                           <  2:2133050‑M1/91‑1 (MQ=255)

                                                                   cATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTT                          <  1:2110607‑M1/91‑1 (MQ=255)

                                                                        ttCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCtt                     <  2:2763494/91‑1 (MQ=255)

                                                                         tCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTTGCttt                    >  2:2055798/1‑91 (MQ=255)

                                                                             AACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACa                <  2:2553561‑M1/91‑1 (MQ=255)

                                                                               CCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCGTTAACATc              <  2:3370683‑M1/91‑1 (MQ=255)

                                                                                CATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCt             <  1:1482245‑M1/91‑1 (MQ=255)

                                                                                 aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt            >  1:1899522/1‑91 (MQ=255)

                                                                                 aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt            <  1:273544/91‑1 (MQ=255)

                                                                                 aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt            >  2:71566/1‑91 (MQ=255)

                                                                                 aTAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCtt            <  1:1346401/91‑1 (MQ=255)

                                                                                  tagtagCTGCGATTCcagctaggtttcgaaggatgtacaatgtaatcttaaatacgggttactttagatactatttattccaattgcttta           <  2:3038447‑M2/91‑77 (MQ=255)

                                                                                   agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca          >  1:2326096‑M2/1‑89 (MQ=255)

                                                                                   agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca          >  1:3410159‑M2/1‑89 (MQ=255)

                                                                                   agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca          >  2:2693354‑M2/1‑89 (MQ=255)

                                                                                   agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca          >  1:1832855‑M2/1‑89 (MQ=255)

                                                                                   agtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTca          <  1:844135‑M2/91‑3 (MQ=255)

                                                                                    gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa         >  1:369353‑M2/1‑88 (MQ=255)

                                                                                    gtagCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTcaa         <  2:1937584‑M2/91‑4 (MQ=255)

                                                                                      agCTGgaatcgcagctactatggtttcgaaggatgtacaatgtaatcttaaatacgggttactttagatactatttattccaatt             >  2:1347605‑M1/1‑5 (MQ=255)

                                                                                        CTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTTCGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAAc     >  1:3263226‑M1/1‑91 (MQ=255)

                                                                                        CTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAAc     >  1:3479056‑M1/1‑91 (MQ=255)

                                                                                        CTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTAAAAAAc     >  2:777187‑M1/1‑91 (MQ=255)

                                                                                         TGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACt    >  1:2881404‑M1/1‑91 (MQ=255)

                                                                                         TGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACt    >  2:283057‑M1/1‑91 (MQ=255)

                                                                                         TGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACt    >  1:698385‑M1/1‑91 (MQ=255)

                                                                                          GCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTg   <  2:1489375‑M1/91‑1 (MQ=255)

CTCAACGTCAATAAAGCAATTGGAATAAATAGTATCTAAAGTAACCCGTATTTAAGATTACATTGTACATCCTTCGAAACCATAGTAGCTGCGATTCCAGCTAGGTTTCCTTTTATCCCAATTTTAGCTAATTTTTTTGCTACGCCCTTTAAGTTTTTGGCTTTAACATCTTCAAAAACTGC  >  NC_012417/2058‑2239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.