BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1168782	226 (1.190)	9 (0.060)	4/124	NT	5.3%	intergenic (+638/+15)	scn_2/USA300HOU_RS05810	Staphylococcal complement inhibitor/hypothetical protein
*	?	USA300TCH1516_ALE	= 2220770	146 (0.990)	9 (0.060)	4/124	NT	5.3%	intergenic (‑421/+141)	USA300HOU_RS11345/atpC	hypothetical protein/ATP synthase epsilon chain

Only 100 of 301 total aligned reads displayed.

TACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATAAGC  >  USA300TCH1516_ALE/1168693‑1168872

tACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCAttt                                                                                           >  1:3375274/1‑91 (MQ=255)

  cTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCt                                                                                         <  1:3839351/91‑1 (MQ=255)

   tCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTa                                                                                        >  1:780250/1‑91 (MQ=255)

   tCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTa                                                                                        <  1:2355306/91‑1 (MQ=255)

        tATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCa                                                                                   <  1:2851175/91‑1 (MQ=255)

           tCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActc                                                                                >  1:2580491/1‑91 (MQ=255)

            tcatttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCActct                                                                               <  1:3783629/88‑1 (MQ=255)

              ttttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCttt                                                                             >  2:201278/1‑91 (MQ=255)

              ttttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCttt                                                                             >  2:889990/1‑91 (MQ=255)

               tttttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCtttt                                                                            >  1:703092/1‑91 (MQ=255)

                ttttAAGTACACATTAGCTACAGCTAATGATGAAGAACCACTACATAATAAATCATTGGTGGTTCTTTATCATTTCTATCTCACTCTTTTa                                                                           >  1:3448727/1‑91 (MQ=255)

                  ttAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACt                                                                         >  2:422840/1‑91 (MQ=255)

                   tAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTg                                                                        >  2:1096010/1‑91 (MQ=255)

                    aaGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCGTTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTgg                                                                       <  2:3188617/91‑1 (MQ=255)

                      gTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaa                                                                     >  1:485248/1‑91 (MQ=255)

                      gTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaa                                                                     >  1:2708689/1‑91 (MQ=255)

                       tACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaag                                                                    >  2:126573/1‑91 (MQ=255)

                       tACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaag                                                                    <  2:2498119/91‑1 (MQ=255)

                       tACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaag                                                                    >  1:2969667/1‑91 (MQ=255)

                         cacaTTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGgaagaa                                                                  <  2:753279/91‑1 (MQ=255)

                             ttAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAg                                                              <  2:16239/91‑1 (MQ=255)

                              tAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGt                                                             >  2:100814/1‑91 (MQ=255)

                              tAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGt                                                             <  1:1491178/91‑1 (MQ=255)

                                gCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGttt                                                           >  2:3349739/1‑91 (MQ=255)

                                gCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGttt                                                           >  1:1992412/1‑91 (MQ=255)

                                 cTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTa                                                          <  1:3432763/91‑1 (MQ=255)

                                   gtaGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACg                                                        >  2:1667181/3‑91 (MQ=255)

                                   aCAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACg                                                        >  2:2507438/1‑91 (MQ=255)

                                     aGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGtt                                                      >  1:817953/1‑91 (MQ=255)

                                         aaTGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTa                                                  >  1:898920/1‑91 (MQ=255)

                                         aaTGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTa                                                  >  2:1409511/1‑91 (MQ=255)

                                          aTGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAg                                                 >  1:2017971/1‑91 (MQ=255)

                                          aTGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTGACTGGAAGAAAAAGTTTACGTTTGTAg                                                 <  2:3633874/91‑1 (MQ=255)

                                           tGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGa                                                >  2:3038655/1‑91 (MQ=255)

                                           tGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGa                                                <  2:2694395/91‑1 (MQ=255)

                                            gATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGaa                                               >  1:368473/1‑91 (MQ=255)

                                             aTAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAAc                                              >  2:2123985/1‑91 (MQ=255)

                                             aTAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAAc                                              <  2:919008/91‑1 (MQ=255)

                                               taagAACCACTACATAATAAATCATTAGTGGCTCTTAAACATTagccacagctaatgtgtacttaaaaataggaatacatgagtaaaactc                                            >  2:1096469‑M1/2‑43 (MQ=255)

                                                aaGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATg                                           >  2:2449417/1‑91 (MQ=255)

                                                   aaCCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCca                                        >  1:1449329/1‑91 (MQ=255)

                                                    aCCACTACATCATAAATCTTTAATGGTTCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgta                                       >  1:302457‑M1/1‑38 (MQ=255)

                                                     ccACTACATCATAAATCTTTAATGGTTCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtat                                      >  1:3672422‑M1/1‑37 (MQ=255)

                                                     ccACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCcaca                                      >  2:1591916/1‑91 (MQ=255)

                                                     ccACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCcaca                                      >  2:777030/1‑91 (MQ=255)

                                                     ccACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCcaca                                      >  1:1849061/1‑91 (MQ=255)

                                                     ccACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAATTTACGTTTGTAGAACATGCcaca                                      >  2:1848416/1‑91 (MQ=255)

                                                       aCTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAAt                                    <  2:1514254/91‑1 (MQ=255)

                                                        cTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATa                                   >  2:1964417/1‑91 (MQ=255)

                                                          aCATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAcc                                 >  2:479695/1‑91 (MQ=255)

                                                          aCATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATAcc                                 >  2:2286824/1‑91 (MQ=255)

                                                             taataaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCaaa                              >  1:2254893/1‑91 (MQ=255)

                                                             taataaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCaaa                              <  1:3184706/91‑1 (MQ=255)

                                                             taataaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCaaa                              <  2:2969667/91‑1 (MQ=255)

                                                               ataaATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCaaaaa                            >  1:1698225/1‑91 (MQ=255)

                                                                 aaaTCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAaata                          >  1:2411233/1‑91 (MQ=255)

                                                                  aaTCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACGTGCCACAATACCAAAaataa                         >  2:3501580/1‑91 (MQ=255)

                                                                   aTCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAaataat                        <  2:3881641/91‑1 (MQ=255)

                                                                   aTCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAaataat                        <  1:1361598/91‑1 (MQ=255)

                                                                    tCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAAtt                       <  1:1107493/91‑1 (MQ=255)

                                                                      aTTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTaa                     <  2:555316/91‑1 (MQ=255)

                                                                       ttAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAg                    >  1:972834/1‑91 (MQ=255)

                                                                       ttAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTATAGAACATGCCACAATACCAAAAATAATTAAg                    >  1:3303231/1‑91 (MQ=255)

                                                                        tAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGa                   >  2:3021106/1‑91 (MQ=255)

                                                                        tAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGa                   <  1:3822801/91‑1 (MQ=255)

                                                                         aGTGGTTCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaa                  >  1:1707636‑M1/1‑17 (MQ=255)

                                                                         aGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaa                  >  1:3668976/1‑91 (MQ=255)

                                                                           tGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaaa                >  1:1735452/1‑91 (MQ=255)

                                                                            ggTTCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaa               <  1:1041684‑M1/91‑78 (MQ=255)

                                                                            ggTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTATGTAGAACATGCCACAATACCAAAAATAATTAAGaaaaa               <  2:3734701/91‑1 (MQ=255)

                                                                            ggTGCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGaaaaa               <  2:83421/91‑1 (MQ=255)

                                                                              ttCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaa             <  2:281271‑M1/91‑80 (MQ=255)

                                                                              ttCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaa             >  2:3665922‑M1/1‑12 (MQ=255)

                                                                              ttCTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaa             >  2:1767869‑M1/1‑12 (MQ=255)

                                                                               tCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATaa            <  2:2239207/91‑1 (MQ=255)

                                                                                cTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaag           >  2:2390333‑M1/1‑10 (MQ=255)

                                                                                cTTTATCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaag           <  1:1255743‑M1/91‑82 (MQ=255)

                                                                                cTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTAGGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAg           <  1:3082282/91‑1 (MQ=255)

                                                                                cTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAg           <  1:3697185/91‑1 (MQ=255)

                                                                                cTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAg           <  2:433940/91‑1 (MQ=255)

                                                                                   tATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACg        >  1:3864996/1‑91 (MQ=255)

                                                                                   tATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACg        >  2:3852446/1‑91 (MQ=255)

                                                                                    aTCATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtatt       <  1:2126215‑M1/91‑86 (MQ=255)

                                                                                    aTCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGa       >  2:1689551/1‑91 (MQ=255)

                                                                                    aTCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGa       >  2:526063/1‑91 (MQ=255)

                                                                                    aTCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGa       >  2:401433/1‑91 (MQ=255)

                                                                                    aTCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGa       >  2:3114494/1‑91 (MQ=255)

                                                                                     tCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGAt      <  2:3802722/91‑1 (MQ=255)

                                                                                     tCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGAt      <  2:2875585/91‑1 (MQ=255)

                                                                                     acaTTaaacacagctaatgtgtatgtaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtattt      <  2:3600338‑M1/90‑87 (MQ=255)

                                                                                      cATTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtatttc     <  1:622700‑M1/91‑88 (MQ=255)

                                                                                      cATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATa     >  2:2724169/1‑91 (MQ=255)

                                                                                      cATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATa     >  2:11622/1‑91 (MQ=255)

                                                                                       aTTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtatttct    <  1:3584872‑M1/91‑89 (MQ=255)

                                                                                       aTTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtatttct    >  1:2196‑M1/1‑3 (MQ=255)

                                                                                       aTTaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtatttct    <  1:416297‑M1/91‑89 (MQ=255)

                                                                                       aTTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATaa    >  1:3037840/1‑91 (MQ=255)

                                                                                       aTTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATaa    >  2:2576758/1‑91 (MQ=255)

                                                                                        ttaaacacagctaatgtgtatttaaaaataggaatacatgagtaaaactcatgtataagaaatactaatttctaaagaaaaagtatttctt   <  2:1229853‑M1/91‑90 (MQ=255)

                                                                                         ttCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATAAGc  >  2:1497105/1‑91 (MQ=255)

TACTCATGTATTCATTTTTTAAGTACACATTAGCTACAGCTAATGATAAAGAACCACTACATAATAAATCATTAGTGGTTCTTTATCATTTCTATCTCACTCTTTTACTGGAAGAAAAAGTTTACGTTTGTAGAACATGCCACAATACCAAAAATAATTAAGAAAAATAAGACGATAAGC  >  USA300TCH1516_ALE/1168693‑1168872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.