BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1841984 =	192 (1.010)	16 (0.100)	11/134	NT	10.1%	intergenic (+24/+70)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	1842029 =	123 (0.770)	16 (0.100)	11/134	NT	10.1%	intergenic (+69/+25)	htrA/tyrS	Serine protease Do‑like HtrA/Tyrosine‑‑tRNA ligase

Only 100 of 268 total aligned reads displayed.

ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAA  >  USA300TCH1516_ALE/1841894‑1842074

acCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTaa                                                                                             >  1:3107242/1‑91 (MQ=255)

acCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTaa                                                                                             <  2:3591178/91‑1 (MQ=255)

 tgatggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattag                                                                                            >  2:1841750‑M1/90‑91 (MQ=255)

 tgatggcgaatttacgattattcgtcgcgataagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattag                                                                                            >  2:2040411‑M1/90‑91 (MQ=255)

 ccAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAag                                                                                            >  1:937521/1‑91 (MQ=255)

 ccAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAag                                                                                            <  2:1749585/91‑1 (MQ=255)

 ccAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAag                                                                                            >  2:3170751/1‑91 (MQ=255)

  gagggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattaga                                                                                           >  2:3704546‑M1/89‑91 (MQ=255)

  cAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAaga                                                                                           <  1:1945081/91‑1 (MQ=255)

   atggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattagag                                                                                          <  2:1641696‑M1/4‑1 (MQ=255)

    tggcgaatttacgattattcgtcgaaaaaaaaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGc                                                                                         >  2:3307374‑M1/87‑91 (MQ=255)

     ggcgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGcc                                                                                        <  2:710254‑M1/6‑1 (MQ=255)

     aaCGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGcc                                                                                        <  1:2069850/91‑1 (MQ=255)

       cgaatttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTa                                                                                      <  1:1649284‑M1/8‑1 (MQ=255)

           tttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCa                                                                                  >  2:1140553‑M1/80‑91 (MQ=255)

           tttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCa                                                                                  >  2:2767007‑M1/80‑91 (MQ=255)

           tttacgattattcgacgcaataagaaaaaatacttcatggttaactatcaataaatattattgcatagctaaataaattAGAGCCTACTCa                                                                                  >  2:3814004‑M1/80‑91 (MQ=255)

           aaaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCa                                                                                  >  1:850831/1‑91 (MQ=255)

            ttacgattattcgtcgcggtaagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAt                                                                                 >  1:2328267‑M1/79‑91 (MQ=255)

            aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt                                                                                 <  2:416693/91‑1 (MQ=255)

            aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt                                                                                 >  1:2594820/1‑91 (MQ=255)

            aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt                                                                                 <  2:208309/91‑1 (MQ=255)

            aaGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt                                                                                 <  2:2885912/91‑1 (MQ=255)

             aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                               >  1:1107035/1‑91 (MQ=255)

             aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                               >  1:2820055/1‑91 (MQ=255)

             aGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAt‑t                                                                               <  1:3447740/91‑1 (MQ=255)

              gCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑Ta                                                                              <  1:1453223/91‑1 (MQ=255)

              gCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑Ta                                                                              <  2:2999810/91‑1 (MQ=255)

               ccGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TAc                                                                             <  1:1874360/91‑1 (MQ=255)

                cGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACa                                                                            >  1:1813028/1‑91 (MQ=255)

                   tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTc                                                                         <  1:1002043/91‑1 (MQ=255)

                   tCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTc                                                                         >  1:2357478/1‑91 (MQ=255)

                     aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCtt                                                                       <  2:2266089/91‑1 (MQ=255)

                     aGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCtt                                                                       >  2:2380915/1‑91 (MQ=255)

                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TCCATTCTTAgg                                                                    >  2:2085698/1‑91 (MQ=255)

                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAgg                                                                    >  1:3614994/1‑91 (MQ=255)

                        aCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAgg                                                                    <  1:1778869/91‑1 (MQ=255)

                        aCGCCAATCACCTGGCCAAGGCGATAGCGATTGCTTTAGATAATTTACAGGCAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAgg                                                                    <  1:3429317/91‑1 (MQ=255)

                         cGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGga                                                                   >  2:258977/1‑91 (MQ=255)

                              aTCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaa                                                              >  2:2434860/1‑91 (MQ=255)

                               taagaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                             >  2:1231104‑M1/60‑91 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAgaatgta                                                              <  1:3770785/91‑3 (MQ=37)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                             <  2:3231545/91‑1 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                             <  1:1141124/91‑1 (MQ=255)

                               tCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                             <  2:810777/91‑1 (MQ=255)

                               acACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGGCAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGgaatgaat                                                             <  2:2644933/90‑1 (MQ=255)

                                gccttGGCC‑AGGTGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                           >  2:437232/5‑91 (MQ=255)

                                cACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAata                                                            <  2:3042899/91‑1 (MQ=255)

                                aagaaaaaatactgcatggttaactatcaataaatataattgcttagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAata                                                            >  1:3873915‑M1/59‑91 (MQ=255)

                                 agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                           >  1:294512‑M1/58‑91 (MQ=255)

                                 agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                           >  1:727456‑M1/58‑91 (MQ=255)

                                 agaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAatat                                                           >  1:2985431‑M1/58‑91 (MQ=255)

                                 aCCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAgaatgtaat                                                            <  2:273759/91‑5 (MQ=25)

                                  gaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATg                                                          >  1:141262‑M1/57‑91 (MQ=255)

                                  gaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATg                                                          >  2:911011‑M1/57‑91 (MQ=255)

                                  ccTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATg                                                          >  2:34622/1‑91 (MQ=255)

                                  aaaaaaatacttcatggttaactatcaataaatataattgcatagctaaataaattAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATg                                                          >  2:961736‑M1/57‑91 (MQ=255)

                                     ggCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGt                                                       <  1:3768271/91‑1 (MQ=255)

                                      gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAg                                                        >  2:1574544/1‑89 (MQ=255)

                                      gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAg                                                        <  1:1574544/89‑1 (MQ=255)

                                      gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTa                                                      >  2:836031/1‑91 (MQ=255)

                                      gCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTa                                                      >  1:760720/1‑91 (MQ=255)

                                        cAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TTCATTCTTAGGAATGAATATGAGTAgg                                                    <  2:2207049/91‑1 (MQ=255)

                                          aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGct                                                  >  2:2805777/1‑91 (MQ=255)

                                          aGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGct                                                  <  2:2516620/91‑1 (MQ=255)

                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTGAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGctc                                                 <  1:2790767/91‑1 (MQ=255)

                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGctc                                                 <  2:1073760/91‑1 (MQ=255)

                                           ggCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGActc                                                 >  1:3004155/1‑91 (MQ=255)

                                               aTAGAGATCTCTTTAGATAATGTACAGACAGAAAAGTACATTAAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGctcttaa                                             <  2:3376858/91‑4 (MQ=14)

                                                tAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatt                                            >  1:2207770/1‑91 (MQ=255)

                                                  gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                          >  1:2470193/1‑91 (MQ=255)

                                                  gagaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAattta                                          <  1:321983/91‑1 (MQ=255)

                                                   agaTTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAatttat                                         <  2:1414590/91‑1 (MQ=255)

                                                            tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                >  2:196183/1‑91 (MQ=255)

                                                            tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                >  1:3708320/1‑91 (MQ=255)

                                                            tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                >  1:1293349/1‑91 (MQ=255)

                                                            tAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATg                                >  1:1339992/1‑91 (MQ=255)

                                                              gATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCa                              >  2:1810058/1‑91 (MQ=255)

                                                               aTAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCaa                             <  2:576513/91‑1 (MQ=255)

                                                                tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                            <  2:838295/91‑1 (MQ=255)

                                                                tAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAt                            <  1:3296968/91‑1 (MQ=255)

                                                                 aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                           <  2:214563/91‑1 (MQ=255)

                                                                 aaTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAAtt                           >  2:1246734/1‑91 (MQ=255)

                                                                  aTTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATta                          >  2:3420671/1‑91 (MQ=255)

                                                                   tttACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                         >  1:1072283/1‑91 (MQ=255)

                                                                   tttACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtat                         <  1:3377674/91‑1 (MQ=255)

                                                                    ttACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATGCTTAGGAATGGATATGAGTAGGCTCTAATTTATTTAGCTATGCAATtata                        <  2:101872/91‑1 (MQ=255)

                                                                      acagacagAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTAtatt                      <  2:1436073/91‑1 (MQ=255)

                                                                            agaAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGa                <  1:2696809/91‑1 (MQ=255)

                                                                               aaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg             <  1:2409650/91‑1 (MQ=255)

                                                                               aaaGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAg             <  1:2153554/91‑1 (MQ=255)

                                                                                 aGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGtt           >  2:3731518/1‑91 (MQ=255)

                                                                                   tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa         >  2:118901/1‑91 (MQ=255)

                                                                                   tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa         >  1:477709/1‑91 (MQ=255)

                                                                                   tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa         >  2:749192/1‑91 (MQ=255)

                                                                                   tACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTaa         >  1:1700002/1‑91 (MQ=255)

                                                                                      aTTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCa      >  2:1671780/1‑91 (MQ=255)

                                                                                        ttAGAGCCTACTCATATTCATTCCTAAGAATGTA‑ATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATg    <  1:2443523‑M1/89‑1 (MQ=255)

                                                                                         aaGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGa   >  1:385955/1‑91 (MQ=255)

                                                                                          AGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGaa  >  2:1829455‑M1/1‑91 (MQ=255)

ACCAAAACGTCAAAGCCGATCAGAACGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAATTTACAGACAGAAAAGTACATTAAGAGCCTACTCAT‑TACATTCTTAGGAATGAATATGAGTAGGCTCTAATTTATTTAGCTATGCAATTATATTTATTGATAGTTAACCATGAA  >  USA300TCH1516_ALE/1841894‑1842074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.