| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2357390 | 140 (0.730) | 19 (0.110) | 10/140 | NT | 13.3% | intergenic (‑340/+198) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | = 2357406 | 126 (0.760) | intergenic (‑356/+182) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
Only 100 of 298 total aligned reads displayed.
CTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTT > USA300TCH1516_ALE/2357300‑2357480 | cTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA < 1:2473085‑M1/91‑1 (MQ=255)cTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA < 2:166485‑M1/91‑1 (MQ=255) tcattcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATGTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaaa < 1:3871457/91‑1 (MQ=255) cattcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaaaa > 2:927961/1‑91 (MQ=255) attcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaaaaa > 2:1185690/1‑91 (MQ=255) ttcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAAc > 2:1552221/1‑91 (MQ=255) tcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACa > 1:2730977/1‑91 (MQ=255) tcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACa < 2:3531630/91‑1 (MQ=255) aGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacaga < 2:1395900‑M1/91‑9 (MQ=255) aGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAtt < 2:2234658/91‑1 (MQ=255) aGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAtt < 1:1111244/91‑1 (MQ=255) tAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGt < 2:2168389/91‑1 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt > 2:3663335/1‑91 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt > 2:2573927/1‑91 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt > 2:3791977/1‑91 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt > 2:3792538/1‑91 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt < 2:443700/91‑1 (MQ=255) gTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTc > 1:3696009/1‑91 (MQ=255) ataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTc > 1:3556781‑M1/67‑91 (MQ=255) taaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCa > 2:1059891‑M1/66‑91 (MQ=255) taaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCa > 2:472358‑M1/66‑91 (MQ=255) gAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAt < 1:2666850‑M2/91‑2 (MQ=255) aagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACGTAAAAACATTTCTGTTCATa > 1:3756385‑M1/64‑91 (MQ=255) aaTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaa < 1:804571‑M2/91‑4 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgtttttaagt < 2:3323420‑M1/91‑22 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagt < 1:1629808‑M2/91‑6 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagt > 2:2345216‑M2/1‑86 (MQ=255) atttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGt > 1:517947‑M1/61‑91 (MQ=255) atttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGt > 2:1238492‑M1/61‑91 (MQ=255) atttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGt > 2:3062020‑M1/61‑91 (MQ=255) tGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGATCAtaagtc < 1:3483757‑M2/91‑7 (MQ=255) gATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgtttttaagtcc < 1:2682953‑M1/91‑24 (MQ=255) gATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACCTAAAAAAATTTCTGTTCAtaagtcc < 2:2805192‑M2/91‑8 (MQ=255) aTCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccg < 2:2910208‑M2/91‑9 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCGCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCGtaagtccga > 1:668555‑M2/1‑82 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAACGTAAATATAAAGAAATCGGACTTAAAAACATTCCTGTTTAtaagttcga < 2:878403‑M2/91‑10 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga > 1:1864289‑M2/1‑82 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga > 1:3454645‑M2/1‑82 (MQ=255) cAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccgat > 1:989669‑M2/1‑81 (MQ=255) gcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGTCCGatat > 2:544046‑M1/54‑91 (MQ=255) tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt < 1:2787217/91‑1 (MQ=255) tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt < 2:1035325/91‑1 (MQ=255) gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt > 1:1918550/1‑91 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 2:1591982/91‑1 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 1:467168/91‑1 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 1:528171/91‑1 (MQ=255) catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTCATTCaa > 2:1097224/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTGAATAAAAAAgcg > 2:3219689/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcg > 1:2708876/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcg > 1:2003564/1‑91 (MQ=255) aGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGCCTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcg > 1:3273097/1‑91 (MQ=255) gATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcgc < 2:1015143/91‑1 (MQ=255) gATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcgc > 2:2302394/1‑91 (MQ=255) cGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAccc < 2:173297/91‑1 (MQ=255) cACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCca > 1:1392568/1‑91 (MQ=255) cACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCca < 1:2812756/91‑1 (MQ=255) aCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcat < 1:2923155/91‑1 (MQ=255) gcAAAAAAGTAAATATAGAGAAATCGGACTTAAAGACATTTCTGTTCAGAAGTCCGATATGTTATTCAATAAAAAAGCGCGCACCCcatca < 2:3316092/90‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat < 2:2463607/91‑1 (MQ=255) aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa < 2:1334767/91‑1 (MQ=255) aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa > 1:2497823/1‑91 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg < 1:3429433/91‑1 (MQ=255) aaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGtt < 1:2276899/91‑1 (MQ=255) aGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGttt < 1:1064489/91‑1 (MQ=255) aGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGttt < 1:898733/91‑1 (MQ=255) tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt > 1:2833119/1‑91 (MQ=255) aaaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgtt < 1:1569009/91‑1 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 1:2351055/1‑91 (MQ=255) atatAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGa > 2:760296/1‑91 (MQ=255) atatAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGa > 2:3351103/1‑91 (MQ=255) tataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAg < 2:2038872/91‑1 (MQ=255) ataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGt < 2:1925066/91‑1 (MQ=255) ataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGt > 1:3036897/1‑91 (MQ=255) aaGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagcta < 1:2528072‑M2/91‑61 (MQ=255) aaGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCa > 1:1433688/1‑91 (MQ=255) aGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCAc < 1:3734218/91‑1 (MQ=255) gAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACg < 1:1950259/91‑1 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc > 1:3187767/1‑91 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc < 1:2875948/91‑1 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:3785211‑M1/1‑91 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:1831354‑M1/1‑91 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga > 1:667900‑M1/1‑9 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga < 2:3473421‑M1/91‑83 (MQ=255) tCGGACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga < 1:1314505‑M2/91‑67 (MQ=255) TCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTc > 2:2484468‑M1/1‑84 (MQ=255) TCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCttt < 1:1217141‑M1/91‑1 (MQ=255) CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa < 2:827909‑M1/91‑1 (MQ=255) CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa > 2:3185009‑M1/1‑91 (MQ=255) ggACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatc < 1:5782‑M2/91‑69 (MQ=255) ggACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatc < 1:3291677‑M2/91‑69 (MQ=255) GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa > 2:2708876‑M1/1‑91 (MQ=255) gACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatcttaaaatatgatgaagctagtttgatca < 2:2215648‑M1/91‑86 (MQ=255) aCTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaa < 1:2164559‑M1/91‑87 (MQ=255) aCTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaa > 1:1247077‑M1/1‑5 (MQ=255) aCTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaa < 1:835753‑M2/91‑71 (MQ=255) aCTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaa < 2:3322936‑M2/91‑71 (MQ=255) ttAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaatt < 1:1509940‑M1/91‑89 (MQ=255) ttAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaatt < 1:987377‑M1/91‑89 (MQ=255) TTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCt > 2:957690‑M1/1‑91 (MQ=255) aaaaaCATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaatttc < 1:3055197‑M2/91‑75 (MQ=255) | CTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTT > USA300TCH1516_ALE/2357300‑2357480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |