| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2561162 = | 172 (0.900) | 18 (0.100) | 9/146 | NT | 10.6% | coding (648/657 nt) | USA300HOU_RS13195 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2561195 = | 147 (0.850) | intergenic (+24/+39) | USA300HOU_RS13195/cpdA | hypothetical protein/3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA | |||||
Only 100 of 225 total aligned reads displayed.
GAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTG > USA300TCH1516_ALE/2561072‑2561251 | gaAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATaaa < 1:2282518/91‑1 (MQ=255) agatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttaca < 2:2867152‑M1/3‑1 (MQ=255) aaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAacac > 1:1156823/1‑91 (MQ=255) aaTGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAacac > 2:1992531/1‑91 (MQ=255) tatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttacacac > 1:2588900‑M1/86‑91 (MQ=255) ggAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACg > 2:1991663/1‑91 (MQ=255) ggAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACg > 1:978769/1‑91 (MQ=255) gAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgt > 2:354044/1‑91 (MQ=255) aaTACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgta < 2:1493966/91‑1 (MQ=255) aTACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaa < 1:354044/91‑1 (MQ=255) tACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACgtaag > 1:625749/1‑91 (MQ=255) gCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTaaa < 1:757834/91‑1 (MQ=255) cTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAac > 1:1534079/1‑91 (MQ=255) ttAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAacac > 1:1996858/1‑91 (MQ=255) aaTTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACAt > 2:3280/1‑91 (MQ=255) aaTTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACAt < 2:818208/91‑1 (MQ=255) ttCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTa > 1:657711/1‑91 (MQ=255) tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTAc > 1:3321752/1‑91 (MQ=255) tCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTAc > 1:144596/1‑91 (MQ=255) ccAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcg < 1:587821/91‑1 (MQ=255) ccAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcg < 1:3644202/91‑1 (MQ=255) ccAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcg > 2:2143034/1‑91 (MQ=255) ccAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcg > 1:2629622/1‑91 (MQ=255) cAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcgc < 2:225729/91‑1 (MQ=255) cAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcgc < 2:3429990/91‑1 (MQ=255) acgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTcgcg > 1:1743158‑M1/64‑91 (MQ=255) aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTcgcg < 2:2339204/91‑1 (MQ=255) ggAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgt > 1:3720472/1‑91 (MQ=255) ggAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgt < 1:3232531/91‑1 (MQ=255) cgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACGCATTACTCGCgt > 1:2984087‑M1/63‑91 (MQ=255) cgatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCgt > 1:2716236‑M1/63‑91 (MQ=255) gatacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCgtg > 2:2198879‑M1/62‑91 (MQ=255) atacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCgtgt > 2:3006191‑M1/61‑91 (MQ=255) aagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtgt > 2:3154327/1‑91 (MQ=255) tacaaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCgtgtg > 2:1241243‑M1/60‑91 (MQ=255) gaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCgtgtgt > 2:3586529/1‑91 (MQ=255) caaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCGTGTGTa > 1:88439‑M1/58‑91 (MQ=255) aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCNGCAACAANATAAACACACGTAAGTAAACACATTACTCGCGTGTNTa > 2:106238/1‑91 (MQ=255) aaaGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTa > 1:2408907/1‑91 (MQ=255) aaataatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCGTGTGTaa > 2:3059746‑M1/57‑91 (MQ=255) aataatagaaatttaaaatgcgcaaacctgacccagtgtgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCGTGTGTaaa > 2:795476‑M1/56‑91 (MQ=255) aGTGCATTTATGTGCAACCACATTCATATACACTTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTaaa < 1:1984931/91‑1 (MQ=255) taatagaaatttaaaatgcgcaaacctgacccagtttgcgcattttatgttttACACACGTAAGTAAACACATTACTCGCGTGTGTAAAAc > 2:1564524‑M1/54‑91 (MQ=255) tGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAAc < 1:2210620/91‑1 (MQ=255) tGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAAc > 1:1093293/1‑91 (MQ=255) gCATTTATGTGCAACCACATTCCTATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACa > 2:942754/1‑91 (MQ=255) gCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACa < 2:1939707/91‑1 (MQ=255) gCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACa < 1:301140/91‑1 (MQ=255) gCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACa > 2:1184068/1‑91 (MQ=255) cATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACAt < 2:2788739/91‑1 (MQ=255) tttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATaa > 1:2024741/1‑91 (MQ=255) tATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATaaaa > 1:545890/1‑91 (MQ=255) aTGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAAt > 1:2021768/1‑91 (MQ=255) tgtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATg > 1:2652192/1‑91 (MQ=255) gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgc < 1:3574237/91‑1 (MQ=255) gtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgc < 1:1080140/91‑1 (MQ=255) tgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACCCACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcg > 2:1996117/1‑91 (MQ=255) gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc > 2:3751834/1‑91 (MQ=255) gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc > 1:1567788/1‑91 (MQ=255) gCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATgcgc > 2:3878346/1‑91 (MQ=255) cAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCa < 1:1991663/91‑1 (MQ=255) aCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaaa > 1:1002286/1‑91 (MQ=255) aCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCaaa < 2:242425/91‑1 (MQ=255) cacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACt < 2:2114478/91‑1 (MQ=255) cacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACt > 2:576179/1‑91 (MQ=255) cacaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACt > 2:2300483/1‑91 (MQ=255) acaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTg > 1:1945326/1‑91 (MQ=255) acaTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTg > 1:871248/1‑91 (MQ=255) ttCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGt > 1:2794977/1‑91 (MQ=255) ttCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGt < 1:1862045/91‑1 (MQ=255) tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTc > 2:2598345/1‑91 (MQ=255) tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAgg < 1:1395091/91‑1 (MQ=255) tataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAgg > 1:1794173/1‑91 (MQ=255) ataCAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGt > 2:2057100/1‑91 (MQ=255) cAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTg > 1:488791/1‑91 (MQ=255) ttGAAAATCAGTAACAAAATAAACACACGTAAGTAAACACATTACTCGCCTGTGTAAAAGATAAAATGCGCAAACTGGGTCAGGTTTgcgc < 2:2956191/91‑1 (MQ=255) tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAATCATAAAATGCGCAAACTGGGTCAGGTTTGCGCa > 1:3447023/1‑91 (MQ=255) tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCa > 1:1676580/1‑91 (MQ=255) tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCa > 2:457302/1‑91 (MQ=255) tGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGCTTGCGCa > 2:3799170/1‑91 (MQ=255) gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAt < 1:279889/91‑1 (MQ=255) aaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCAtttt > 1:2806694/1‑91 (MQ=255) aTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa > 1:532582/1‑91 (MQ=255) aTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTa < 1:2832973/91‑1 (MQ=255) tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaa > 2:1685987/1‑91 (MQ=255) gCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAtt > 2:114245/1‑91 (MQ=255) aacaaAATAAACGCACGTAAGTAAGCACATTGCTCGCGTGTGTAAAACATAAAATGCGCGAACTGGGTCAGGTTTGCGCATGTTAAATTTc < 2:2699645/91‑1 (MQ=255) aacaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc > 1:1651398/1‑91 (MQ=255) acaaAATACACACACGTAAGTAAACCCATTACTCGCGTGTGTAAAACCTAAAACACGCAACCTGGGTCAGGCTCGCGCCTTTTAAATTTCt > 1:3638993/1‑91 (MQ=255) acaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt < 1:3123781/91‑1 (MQ=255) acaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt > 2:853828/1‑91 (MQ=255) acaaAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt < 1:3802974/91‑1 (MQ=255) aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtatt > 1:1419600/1‑91 (MQ=255) aTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCtattat < 2:1545295/91‑1 (MQ=255) tAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTattatt < 2:499546/91‑1 (MQ=255) tAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTattatt < 1:427535/91‑1 (MQ=255) aaaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTAttt < 2:549108/91‑1 (MQ=255) aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg > 1:2479131/1‑91 (MQ=255) aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg > 2:591272/1‑91 (MQ=255) aaCACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTg > 2:1352087/1‑91 (MQ=255) | GAAAATGGAATACAGCTTTAATTCACCAGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTG > USA300TCH1516_ALE/2561072‑2561251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |