| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2654865 = | 197 (1.030) | 25 (0.140) | 10/148 | NT | 12.3% | intergenic (+48/+57) | USA300HOU_RS13650/mhqD | hypothetical protein/Putative hydrolase MhqD |
| ? | USA300TCH1516_ALE | 2654909 = | 174 (0.990) | intergenic (+92/+13) | USA300HOU_RS13650/mhqD | hypothetical protein/Putative hydrolase MhqD | |||||
Only 100 of 273 total aligned reads displayed.
AGGTTTAATTAAGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGTTAAT > USA300TCH1516_ALE/2654775‑2654955 | tcgaagaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaaga < 2:1651399‑M1/1‑1 (MQ=255)tcgaagaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaaga < 2:2777044‑M1/1‑1 (MQ=255)aGGTTTAATTAAGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCaaaaa > 1:451366/1‑91 (MQ=255) ggTTTAATTAAGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCaaaaaa > 2:1594482/1‑91 (MQ=255) ggTTTAATTAAGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCaaaaaa > 2:3331027/1‑91 (MQ=255) gaagaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagaag < 2:2688083‑M1/3‑1 (MQ=255) gaagaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagaag > 2:904044‑M1/89‑91 (MQ=255) gaagaagttcgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagaag < 1:1953349‑M1/3‑1 (MQ=255) gTTTAATTAAGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAg > 1:1654746/1‑91 (MQ=255) aagaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGc < 1:1208513‑M1/4‑1 (MQ=255) ttaattaaGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCg > 1:1807302/1‑91 (MQ=255) agaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCg < 2:1104467‑M1/5‑1 (MQ=255) taattaaGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCgg < 1:2091609/91‑1 (MQ=255) gaagtttgggtgaagggccatgaaattacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCgg < 1:3232584‑M1/6‑1 (MQ=255) ttaaGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCa < 2:3259755/91‑1 (MQ=255) ttaaGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCa < 1:3616599/91‑1 (MQ=255) gCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATg > 1:2616649/1‑91 (MQ=255) cGTATTACCGGCAAATCTCATATCGCTTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGa > 2:2627302/1‑91 (MQ=255) tATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGaaa < 2:1474496/91‑1 (MQ=255) aTTACCGGCAAAGCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTAAAAATCAAAAAAGCGGGCAGATGaaaa < 2:3228831/91‑1 (MQ=255) tACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGt < 2:3770642/91‑1 (MQ=255) tACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGt > 1:2735650/1‑91 (MQ=255) cGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTaaa < 2:225990/91‑1 (MQ=255) cGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTaaa > 1:3403967/1‑91 (MQ=255) cGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTaaa < 2:2038496/91‑1 (MQ=255) ggCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTaaaa < 1:517486/91‑1 (MQ=255) gCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTaaaaa < 1:2051733/91‑1 (MQ=255) gCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTaaaaa > 1:83569/1‑91 (MQ=255) cAAATCTTATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAAt < 2:3444747/91‑1 (MQ=255) aaTCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGCTGAAAAGTAAAAATCt > 2:3701177/1‑91 (MQ=255) aaTCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCt > 2:2061504/1‑91 (MQ=255) aaTCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCt > 2:519183/1‑91 (MQ=255) aaTCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCt < 2:260471/91‑1 (MQ=255) aTCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCtt > 1:2570770/1‑91 (MQ=255) tctcATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCttt < 2:3724322/91‑1 (MQ=255) tctcATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCttt > 1:1833115/1‑91 (MQ=255) ctcATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCtttt > 1:3554307/1‑91 (MQ=255) ctcATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCtttt < 2:2517283/91‑1 (MQ=255) ctcATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCtttt < 1:659647/91‑1 (MQ=255) ttacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTc > 2:2014101‑M1/61‑91 (MQ=255) tacagaaactggattaagggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTcc > 1:3324081‑M1/60‑91 (MQ=255) tacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTcc > 2:1255330‑M1/60‑91 (MQ=255) tacagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTcc > 1:2335710‑M1/60‑91 (MQ=255) atatCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCa > 2:2858062/1‑91 (MQ=255) acagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCa > 2:3358855‑M1/59‑91 (MQ=255) acagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCa > 1:2444405‑M1/59‑91 (MQ=255) tatCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCAt > 2:405722/1‑91 (MQ=255) cagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCAt > 2:63558‑M1/58‑91 (MQ=255) cagaaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCAt > 1:2807819‑M1/58‑91 (MQ=255) atCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCGGATGAAAAGTAAAAATCTTTTCCATc < 2:2220038/91‑1 (MQ=255) tCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCt < 2:3121839/91‑1 (MQ=255) cGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTg < 1:1065574/91‑1 (MQ=255) aaactggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTg > 1:1264529‑M1/55‑91 (MQ=255) aTTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTc > 2:2538705/1‑91 (MQ=255) ttAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCATAAGCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTcc < 2:945862/91‑1 (MQ=255) ttAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTcc > 2:2815684/1‑91 (MQ=255) tggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCg > 1:2300227‑M1/51‑91 (MQ=255) tggattaacggctggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCg > 2:2396076‑M1/51‑91 (MQ=255) tAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCg > 1:968386/1‑91 (MQ=255) tAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCg > 1:2923824/1‑91 (MQ=255) aaaaTATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGc < 1:1866320/91‑1 (MQ=255) aaaaTATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGc < 1:2308632/91‑1 (MQ=255) aaaaTATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAAGCAATAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGc < 1:1291864/91‑1 (MQ=255) aaaTATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGct < 1:381024/91‑1 (MQ=255) aaaTATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGct < 1:1635359/91‑1 (MQ=255) aaTATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGctt > 1:1578782/1‑91 (MQ=255) atatCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGcttc < 1:1376074/91‑1 (MQ=255) cTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTaa > 1:3294414/1‑91 (MQ=255) tataCTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAAt < 1:2858062/91‑1 (MQ=255) taCTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAg > 2:1857860/1‑91 (MQ=255) ggtcaacaaatacttgggaaataacagttctattaagAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGaa > 1:77244‑M1/38‑91 (MQ=255) aTTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACt < 1:502463/91‑1 (MQ=255) aTTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACt < 2:2679473/91‑1 (MQ=255) aaaTTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTAtt < 2:1833115/91‑1 (MQ=255) aaaTTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTAtt < 2:3306229/91‑1 (MQ=255) aaTTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTAttt > 1:1115115/1‑91 (MQ=255) aTTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAACGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTc > 2:2993345/1‑91 (MQ=255) aTTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTATTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTc > 2:3507671/1‑91 (MQ=255) ttAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTccc > 1:1607633/1‑91 (MQ=255) tAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCa < 1:2147215/91‑1 (MQ=255) aGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTGATTTCCCaa < 2:734775/91‑1 (MQ=255) gTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAg > 1:3200517/1‑91 (MQ=255) gTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAg > 1:3456683/1‑91 (MQ=255) gTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAg < 1:3730887/91‑1 (MQ=255) tACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGt < 1:535322/91‑1 (MQ=255) cAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTAt > 2:1228963/1‑91 (MQ=255) aCTTCAAAATCCAAAAAGCGGGCAGATGAAAAGTAAAGATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATttgt < 2:1569366/91‑1 (MQ=255) ttCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATttgttg > 2:2806761/1‑91 (MQ=255) ttCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATttgttg < 2:3282582/91‑1 (MQ=255) ttCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATttgttg > 2:3691969/1‑91 (MQ=255) tcaaaatcaaaaAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGa > 2:3664877/1‑91 (MQ=255) tcaaaatcaaaaAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGa > 2:2322793/1‑91 (MQ=255) aaatcaaaaAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCa > 2:1334156/1‑91 (MQ=255) atcaaaaAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGc > 2:2741020/1‑91 (MQ=255) tcaaaaAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGcc > 1:207387/1‑91 (MQ=255) aaaaaaGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGt > 2:3460077/1‑91 (MQ=255) aaaaaGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGtt < 1:30434/91‑1 (MQ=255) aaaaGTGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGTTa < 2:1664501/91‑1 (MQ=255) aaaGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGTTaa > 2:1355768/1‑91 (MQ=255) aaaGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGACCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGTTaa > 2:3623908/1‑91 (MQ=255) | AGGTTTAATTAAGCGTATTACCGGCAAATCTCATATCGATTAAAATATCTATACTATTGTAAAATTTAGTACAGCACTTCAAAATCAAAAAAGCGGGCAGATGAAAAGTAAAAATCTTTTCCATCTGTCCGCTTCTTAATAGAACTGTTATTTCCCAAGTATTTGTTGACCAGCCGTTAAT > USA300TCH1516_ALE/2654775‑2654955 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |