BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2751374	159 (0.830)	24 (0.140)	12/146	NT	13.9%	intergenic (‑222/+39)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase
*	?	USA300TCH1516_ALE	= 2751393	153 (0.880)	24 (0.140)	12/146	NT	13.9%	intergenic (‑241/+20)	betA/gbsA	Oxygen‑dependent choline dehydrogenase/Betaine aldehyde dehydrogenase

Only 100 of 246 total aligned reads displayed.

ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGT  >  USA300TCH1516_ALE/2751284‑2751464

aCTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG                                                                                            <  1:2264035‑M1/91‑1 (MQ=255)

aCTAACAGGAATGAAATAATCTATGAGTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTG                                                                                            <  1:2523967‑M1/91‑1 (MQ=255)

   aaCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCt                                                                                         <  1:3304702/91‑1 (MQ=255)

   aaCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCt                                                                                         <  2:2535185/91‑1 (MQ=255)

    aCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCtt                                                                                        <  2:1382695/91‑1 (MQ=255)

    aCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCtt                                                                                        <  2:2787201/91‑1 (MQ=255)

    aCAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCtt                                                                                        <  2:2253438/91‑1 (MQ=255)

     cAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtg                                                                                       >  2:787662/1‑91 (MQ=255)

      aGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgt                                                                                      >  1:2912341/1‑91 (MQ=255)

       gTAATGAAATAAACTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTtgtg                                                                                     <  1:3394661/91‑1 (MQ=255)

        tAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTgtgt                                                                                    <  1:561976/91‑1 (MQ=255)

         aaTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGtt                                                                                   <  1:1415783/91‑1 (MQ=255)

         aaTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGtt                                                                                   >  1:1257324/1‑91 (MQ=255)

          aTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTc                                                                                  <  1:3024756/91‑1 (MQ=255)

          aTGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTc                                                                                  <  1:2122395/91‑1 (MQ=255)

           tGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCATTTATACAAAACAAAGTGAGTGTCTTGTGTTCt                                                                                 >  1:3310443/1‑91 (MQ=255)

            gAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCtt                                                                                <  2:3219652/91‑1 (MQ=255)

             aaaTAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTa                                                                               >  1:1573888/1‑91 (MQ=255)

             aaaTAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTa                                                                               >  1:964253/1‑91 (MQ=255)

             aaaTAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTa                                                                               >  1:2201559/1‑91 (MQ=255)

             aaaTAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTa                                                                               >  2:601870/1‑91 (MQ=255)

              aataatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTAc                                                                              <  1:1076154/91‑1 (MQ=255)

              aataatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTAc                                                                              >  2:2086429/1‑91 (MQ=255)

                taatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacaca                                                                            <  1:655206‑M1/91‑17 (MQ=255)

                taatCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACaa                                                                            >  1:653503/1‑91 (MQ=255)

                  atCTATGATTCATTTTGCGTTTAGTCCAAGTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaag                                                                          <  1:3105746‑M1/91‑19 (MQ=255)

                  atCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATg                                                                          >  2:2317481/1‑91 (MQ=255)

                   tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaaga                                                                         <  1:333743‑M1/91‑20 (MQ=255)

                   tCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATgg                                                                         >  2:1880530/1‑91 (MQ=255)

                    cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagac                                                                        <  2:2129766‑M1/91‑21 (MQ=255)

                    cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagac                                                                        <  1:1043045‑M1/91‑21 (MQ=255)

                    cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagac                                                                        <  1:2511292‑M1/91‑21 (MQ=255)

                    cTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGc                                                                        <  1:114672‑M2/91‑2 (MQ=255)

                     tATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagaca                                                                       <  1:3591161‑M1/91‑22 (MQ=255)

                      aTGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcac                                                                      >  2:3392‑M2/1‑88 (MQ=255)

                       tGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcact                                                                     <  2:1451556‑M2/91‑5 (MQ=255)

                        gATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacactc                                                                    <  1:3639922‑M1/91‑25 (MQ=255)

                         aTTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacactca                                                                   <  2:419212‑M1/91‑26 (MQ=255)

                         aTTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacactca                                                                   <  2:419303‑M1/91‑26 (MQ=255)

                         aTTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacactca                                                                   <  2:1147543‑M1/91‑26 (MQ=255)

                           tCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCAcc                                                                 <  1:138641/91‑1 (MQ=255)

                             aTTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCtt                                                               <  2:3445033/91‑1 (MQ=255)

                              ttttGCGTTTAGTCCAAATTATTAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTa                                                              >  1:1611958/1‑91 (MQ=255)

                                 tGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCt                                                           <  1:2050912/91‑1 (MQ=255)

                                  gCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTa                                                          <  1:1451556/91‑1 (MQ=255)

                                   cGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTaa                                                         <  1:478903/91‑1 (MQ=255)

                                      ttAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttt                                                      >  1:1652548/1‑91 (MQ=255)

                                        aGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAAttttt                                                    <  1:2717815/91‑1 (MQ=255)

                                          tCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAt                                                  <  2:1286211/91‑1 (MQ=255)

                                           ccAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTAtt                                                 >  2:214730/1‑91 (MQ=255)

                                              aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                              <  1:2537608/91‑1 (MQ=255)

                                              aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                              >  1:3066826/1‑91 (MQ=255)

                                              aaTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGc                                              <  1:1464191/91‑1 (MQ=255)

                                               aTTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCt                                             <  1:1880530/91‑1 (MQ=255)

                                                ttATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGccattgtaagaacacaagacactcactttgttttgtataagtggcgaa                                            <  2:1243509‑M1/91‑49 (MQ=255)

                                                 tATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaa                                           <  1:2278945/91‑1 (MQ=255)

                                                  atcaatcaACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTaaa                                          <  2:3264619/91‑1 (MQ=255)

                                                   tcaatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatg                                         <  2:1809333‑M2/91‑33 (MQ=255)

                                                   tcaatcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAAc                                         >  1:3651027/1‑91 (MQ=255)

                                                      atcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCaa                                      >  1:848522/1‑91 (MQ=255)

                                                      atcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCaa                                      >  1:3270851/1‑91 (MQ=255)

                                                       tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                     <  1:811632/91‑1 (MQ=255)

                                                       tcaaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAAt                                     <  2:1476979/91‑1 (MQ=255)

                                                         aaCATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTc                                   <  1:3465708/91‑1 (MQ=255)

                                                              ttCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAACTCACTaa                              >  2:2876798/1‑91 (MQ=255)

                                                               tCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGGACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAAt                             <  2:2999628/91‑1 (MQ=255)

                                                               tCGCCACTTATACAAAACAAAGTGAGTGTATTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAACTCACTAAt                             >  2:3380034/1‑91 (MQ=255)

                                                                 gCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCAc                                 <  1:3434153/85‑1 (MQ=255)

                                                                    aCTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTgg                        >  1:1176921/1‑91 (MQ=255)

                                                                    aCTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTgg                        <  2:3472093/91‑1 (MQ=255)

                                                                     cTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGa                       <  2:2558659/91‑1 (MQ=255)

                                                                       tataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatt                     <  2:2072378/91‑1 (MQ=255)

                                                                       tataCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatt                     >  1:3216617/1‑91 (MQ=255)

                                                                         taCAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttg                   >  2:2028288/1‑91 (MQ=255)

                                                                             aaacaaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatt               >  2:1106223/1‑91 (MQ=255)

                                                                                caaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGatttgtatttgt            >  2:2930564/1‑91 (MQ=255)

                                                                                 aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt           >  1:563319/1‑91 (MQ=255)

                                                                                 aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGtt           >  2:3735067/1‑91 (MQ=255)

                                                                                 aaaGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTCTTATTTGCTAAACCAATTCACTAATTGTGCATTTGTATTTGtt           >  1:3882975/1‑91 (MQ=255)

                                                                                   agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa         <  2:519988/91‑1 (MQ=255)

                                                                                   agtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa         <  2:838004/91‑1 (MQ=255)

                                                                                   agtgaatgTCTTGTGTTCTTACTATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaa         <  2:3135427/91‑1 (MQ=255)

                                                                                    gtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaa        <  2:2376849/91‑1 (MQ=255)

                                                                                    gtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaa        <  1:2450067/91‑1 (MQ=255)

                                                                                    gtgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaa        <  2:2650408/91‑1 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaat       <  2:1147753‑M2/91‑67 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaat       <  2:1388331‑M2/91‑67 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       >  2:1324062/1‑91 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       <  1:1230491/91‑1 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       >  2:473902/1‑91 (MQ=255)

                                                                                     tgagtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTaaaa       <  2:3443857/91‑1 (MQ=255)

                                                                                      gagtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatc      <  2:156297‑M2/91‑68 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatca     <  1:2456541‑M2/91‑69 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg     >  2:1575751/1‑91 (MQ=255)

                                                                                       agtgTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtg     <  2:716015/91‑1 (MQ=255)

                                                                                        gtgtCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAAtgt    >  1:1032419/1‑91 (MQ=255)

                                                                                         tgccattgtaagaacacaagacactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcata   >  1:2776805‑M1/1‑2 (MQ=255)

                                                                                         tgccattgtaagaacacaagacactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcata   >  1:2862813‑M1/1‑2 (MQ=255)

                                                                                          gtCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatag  <  1:3283628‑M2/91‑72 (MQ=255)

                                                                                          gtCTTGTGTTCTTACAATGGcactcactttgttttgtataagtggcgaaatgttgattgataatttggactaaacgcaaaatgaatcatag  <  2:1410566‑M2/91‑72 (MQ=255)

ACTAACAGTAATGAAATAATCTATGATTCATTTTGCGTTTAGTCCAAATTATCAATCAACATTTCGCCACTTATACAAAACAAAGTGAGTGTCTTGTGTTCTTACAATGGCACTCACCTTATCTAATTTTTATTTGCTAAACCAATTCACTAATTGTGGATTTGTATTTGTTAAAATGTGT  >  USA300TCH1516_ALE/2751284‑2751464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.