| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 336 (0.940) +TCTCCAGGCACTTGTGCATATTCTGAAA |
89/104 | NT | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
Only 100 of 558 total aligned reads displayed.
TCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAA > CP000731/6463‑6642 | cggctgtgccatataccatagactctttaataggcatatcttggggtataggaacaatcgagtctccaggcacttgtgcatattctgaaaa > 1:3104067‑M2/91‑91 (MQ=255)cggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaa > 1:1061931‑M2/91‑91 (MQ=255)cggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaa > 2:1626649‑M2/91‑91 (MQ=255) gctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATc < 2:3091011‑M2/3‑1 (MQ=255) ctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATcc > 1:1507417‑M2/88‑91 (MQ=255) gtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCAc > 1:828328‑M2/86‑91 (MQ=255) ccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTg > 1:3319428‑M2/83‑91 (MQ=255) catataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaAT‑CACCTGTa < 2:2364894‑M2/10‑1 (MQ=255) atataccacagactctctactagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCCGTa > 2:1953846‑M2/81‑91 (MQ=255) ataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAtg < 1:1778188‑M2/13‑1 (MQ=255) taccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAtgt < 2:954449‑M2/14‑1 (MQ=255) accatagactctttaatagacatttcttggggaataggaactatccactctccaggcacttgtgcatcctctgaaaATCGACCTGTAtgtg > 2:2952971‑M2/77‑91 (MQ=255) accatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAtgtg < 1:267520‑M2/15‑1 (MQ=255) ccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATgtgt > 1:906980‑M2/76‑91 (MQ=255) ccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATgtgt > 2:316363‑M2/76‑91 (MQ=255) tagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCAc < 1:1120324‑M2/19‑1 (MQ=255) agactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACg < 1:2360850‑M2/20‑1 (MQ=255) gactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGc < 1:1965324‑M2/21‑1 (MQ=255) gactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGc > 2:1392916‑M2/71‑91 (MQ=255) ctctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCa > 2:2593664‑M2/69‑91 (MQ=255) tctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCaa < 1:2236785‑M2/24‑1 (MQ=255) tctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCaa < 1:3816994‑M2/24‑1 (MQ=255) tctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCaa < 1:3028663‑M2/24‑1 (MQ=255) tctttaatagacattgcttggggaattggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCaa < 2:3364330‑M2/24‑1 (MQ=255) ctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAc > 2:3433374‑M2/67‑91 (MQ=255) ctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAc > 2:2455096‑M2/67‑91 (MQ=255) tttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgagaATCCACCTGTATGTGTCACGCCAAca < 2:901258‑M2/26‑1 (MQ=255) tttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAca > 1:783892‑M2/66‑91 (MQ=255) taatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatc < 2:2160277‑M2/28‑1 (MQ=255) taatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatc < 1:2494702‑M2/28‑1 (MQ=255) atagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatcat < 1:738642‑M2/30‑1 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAAc > 1:975426‑M2/59‑91 (MQ=255) acatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAAcc < 2:405627‑M2/34‑1 (MQ=255) catttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCa < 2:2262471‑M2/35‑1 (MQ=255) catttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCa > 1:1632430‑M2/57‑91 (MQ=255) catttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCa > 2:1469243‑M2/57‑91 (MQ=255) catttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCa > 2:1200287‑M2/57‑91 (MQ=255) atttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAg < 2:2721155‑M2/36‑1 (MQ=255) ttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTa < 2:267828‑M2/38‑1 (MQ=255) tcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTaa > 1:193795‑M2/53‑91 (MQ=255) cttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAAc > 2:795453‑M2/52‑91 (MQ=255) ttggtgaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACt > 1:3069004‑M2/51‑91 (MQ=255) tggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTa > 2:3216563‑M2/50‑91 (MQ=255) ggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTaa > 2:686850‑M2/49‑91 (MQ=255) gggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAAt > 2:231375‑M2/48‑91 (MQ=255) gggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAAt < 2:2882040‑M2/44‑1 (MQ=255) ggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTCATa > 1:3128069‑M2/47‑91 (MQ=255) gaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAc < 2:3567731‑M2/46‑1 (MQ=255) gaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAc < 1:1033454‑M2/46‑1 (MQ=255) gaataggaaaaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATAc < 1:3490110‑M2/46‑1 (MQ=255) ataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAt > 1:1850261‑M2/44‑91 (MQ=255) ataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAt < 2:3790288‑M2/48‑1 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTa < 2:2832623‑M2/50‑1 (MQ=255) aacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCg > 1:1711114‑M2/39‑91 (MQ=255) caatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGcc > 2:743877‑M2/37‑91 (MQ=255) aatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCct < 2:3610728‑M2/56‑1 (MQ=255) aatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCct < 2:2986573‑M2/56‑1 (MQ=255) aatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCct > 1:3562933‑M2/36‑91 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCctt > 2:3029194‑M2/35‑91 (MQ=255) tccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttc < 1:2750892‑M2/58‑1 (MQ=255) tccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttc > 1:402607‑M2/34‑91 (MQ=255) ccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttct < 1:3424691‑M2/59‑1 (MQ=255) cactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttctt > 2:221420‑M2/32‑91 (MQ=255) actctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCttt > 1:2067414‑M2/31‑91 (MQ=255) actctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCttt > 1:3701070‑M2/31‑91 (MQ=255) ctctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTa > 2:126719‑M2/30‑91 (MQ=255) ctctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTa > 1:655969‑M2/30‑91 (MQ=255) ctctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTa > 1:3864474‑M2/30‑91 (MQ=255) tctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTaa < 1:2210194‑M2/63‑1 (MQ=255) tccaggtacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAAc > 1:2568768‑M2/27‑91 (MQ=255) tccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTTACGCCAACATCATAACCAGGAACTAATACATTATCGCCTTCTTTAAAc > 2:3501908‑M2/27‑91 (MQ=255) ccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACt > 2:631315‑M2/26‑91 (MQ=255) ccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACt < 1:502167‑M2/66‑1 (MQ=255) caggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCAGAACCAGTAACTAATACATTATCGCCTTCTTTAAACtt < 1:3222428‑M2/67‑1 (MQ=255) aggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTa < 1:1311864‑M2/68‑1 (MQ=255) ggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTAt > 1:1425509‑M2/23‑91 (MQ=255) gcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATc > 2:3253718‑M2/22‑91 (MQ=255) gcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATc > 2:1682656‑M2/22‑91 (MQ=255) gcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATc > 1:591203‑M2/22‑91 (MQ=255) acttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAt < 1:1557547‑M2/72‑1 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTc < 1:2810949‑M2/74‑1 (MQ=255) tgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCg < 2:473437‑M2/75‑1 (MQ=255) gtgcatattctgaaaATCCACCTGTATGTGTCACGTCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGa > 1:533583‑M2/16‑91 (MQ=255) gtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATCCAGTATCGCCTTCTTTAAACTTATCATTCGa > 1:2864600‑M2/16‑91 (MQ=255) tgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGaa > 2:558001‑M2/15‑91 (MQ=255) gcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAc < 2:2517105‑M2/78‑1 (MQ=255) gcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAAc < 1:3463980‑M2/78‑1 (MQ=255) catattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt < 1:1187381‑M2/79‑1 (MQ=255) catattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt < 2:1561930‑M2/79‑1 (MQ=255) catattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt > 2:3668208‑M2/13‑91 (MQ=255) ttctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt < 1:1255784‑M2/83‑1 (MQ=255) tgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTca > 2:3321963‑M2/6‑91 (MQ=255) tgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTca < 2:2025216‑M2/86‑1 (MQ=255) gaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaa < 2:2078283‑M2/87‑1 (MQ=255) aaaATCCACCTGTATGTGTCACGCCTACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac < 1:3610916‑M2/88‑1 (MQ=255) aaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac > 2:2784922‑M2/4‑91 (MQ=255) aaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac < 2:19070‑M2/88‑1 (MQ=255) aaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac < 2:18420‑M2/88‑1 (MQ=255) aaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaac < 2:1084774‑M2/88‑1 (MQ=255) aaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaaca > 2:1728654‑M2/3‑91 (MQ=255) | TCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAA > CP000731/6463‑6642 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |