BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	349720 =	193 (1.010)	12 (0.070)	8/142	NT	7.5%	intergenic (+272/‑314)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG
*	?	USA300TCH1516_ALE	349754 =	125 (0.740)	12 (0.070)	8/142	NT	7.5%	intergenic (+306/‑280)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG

Only 100 of 221 total aligned reads displayed.

CAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGA  >  USA300TCH1516_ALE/349664‑349844

cAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCt                                                                                            <  1:3766028/91‑1 (MQ=255)

 aaGATTATTATAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCta                                                                                           >  2:1491656/1‑91 (MQ=255)

  aGATTATTATAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACAAAAAAACAAAAAAGTATATACTATTAATATCTTTTTTGCtat                                                                                          <  2:3295012/91‑1 (MQ=17)

   gATTATTATAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCtata                                                                                         <  1:1191058/91‑1 (MQ=255)

      tattatAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAtt                                                                                      <  1:429219/91‑1 (MQ=255)

      tattatAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAAtt                                                                                      >  2:2473210/1‑91 (MQ=255)

       attatAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATta                                                                                     <  2:1211506/91‑1 (MQ=255)

        ttatAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTTTTATAAtttt                                                                                    >  2:501174/1‑89 (MQ=255)

        ttatAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATtat                                                                                    <  2:102952/91‑1 (MQ=255)

          ctactcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATtata                                                                                   >  1:2056404‑M1/48‑91 (MQ=255)

          ataATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTTCTATATTTATaa                                                                                  >  2:772099/1‑91 (MQ=255)

          ataATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaa                                                                                  >  1:2294789/1‑91 (MQ=255)

          ataATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaa                                                                                  >  2:343544/1‑91 (MQ=255)

          ataATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaa                                                                                  >  2:2444547/1‑91 (MQ=255)

           tactcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaa                                                                                  >  1:38417‑M1/47‑91 (MQ=255)

           tactcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaa                                                                                  >  1:39777‑M1/47‑91 (MQ=255)

           tactcattattttgtctttctatttatttaactatttataattataGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaa                                                                                  >  1:38998‑M1/47‑91 (MQ=255)

           taATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                                 >  2:3841926/1‑91 (MQ=255)

           taATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                                 <  1:2413822/91‑1 (MQ=255)

           taATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                                 <  1:3030986/91‑1 (MQ=255)

              ttGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAg                                                                              <  1:1812050/91‑1 (MQ=255)

              ttGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAg                                                                              <  1:1664130/91‑1 (MQ=255)

                gTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATAAATATCTTTTTTGCTATAATTATAAATAGtt                                                                            <  2:1107467/91‑1 (MQ=255)

                gTATTACATATAGGTGCTGGTAAA‑TTTTATTTACAAAAAAAAAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGtt                                                                            <  2:1618040/91‑1 (MQ=17)

                    tACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                                                        >  1:3439983/1‑91 (MQ=255)

                     aCATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaata                                                                       >  2:3743018/1‑91 (MQ=255)

                     aCATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaata                                                                       >  2:332452/1‑91 (MQ=255)

                      cATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaataa                                                                      <  2:2709613/91‑1 (MQ=255)

                          taGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAg                                                                  >  1:2799753/1‑91 (MQ=255)

                          taGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAg                                                                  <  1:3633844/91‑1 (MQ=255)

                           aGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGa                                                                 <  1:1515330/91‑1 (MQ=255)

                           aGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGa                                                                 <  2:1903/91‑1 (MQ=255)

                            ggTGTTGGTAAATTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATATTTTTTACTATAATTATAAATAGTTAAATAAATAGa                                                                 <  2:2878430/91‑1 (MQ=11)

                            ggTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                                                >  1:2421417/1‑91 (MQ=255)

                               gCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                                             <  2:3278675/91‑1 (MQ=255)

                               gCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                                             <  1:96895/91‑1 (MQ=255)

                                 tGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACa                                                           <  2:3726968/91‑1 (MQ=255)

                                  ggTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                                          >  2:2719981/1‑91 (MQ=255)

                                  ggTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                                          <  2:1927390/91‑1 (MQ=255)

                                  ggTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                                          >  2:2543452/1‑91 (MQ=255)

                                  ggTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                                          >  1:1030745/1‑91 (MQ=255)

                                    tAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaaaa                                                        >  1:371429/1‑91 (MQ=255)

                                    tAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaaaa                                                        >  2:626574/1‑91 (MQ=255)

                                     aaa‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaat                                                       <  1:3558502/91‑1 (MQ=255)

                                      aa‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                                                      >  2:2990996/1‑91 (MQ=255)

                                          tttatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATg                                                   <  2:1855785/91‑1 (MQ=255)

                                           ttatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGa                                                  >  1:3643617/1‑91 (MQ=255)

                                             atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGt                                                <  1:2638883/91‑1 (MQ=255)

                                             atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGt                                                >  2:1754236/1‑91 (MQ=255)

                                              tttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTa                                               >  2:2416331/1‑91 (MQ=255)

                                               ttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                              >  1:327326/1‑91 (MQ=255)

                                               ttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                              >  1:2522856/1‑91 (MQ=255)

                                               ttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAg                                              <  1:2190512/91‑1 (MQ=255)

                                                 taattatagtaaaaaagatattaatagtatatacttttttacTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGGa                                            >  1:2695919‑M2/43‑91 (MQ=255)

                                                 taattatagtaaaaaagatattaatagtatatacttttttacTATAATTATAAATAGTTAAATAAATTGAAAGACAAAATAATGAGTAGGa                                            >  1:124252‑M2/43‑91 (MQ=255)

                                                 aCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGa                                            >  1:3240203/1‑91 (MQ=255)

                                                 aCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGa                                            <  2:2275754/91‑1 (MQ=255)

                                                  cGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                           <  1:1228971/91‑1 (MQ=255)

                                                   gAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGt                                          >  1:2660914/1‑91 (MQ=255)

                                                    aaaTGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGtt                                         <  1:595659/91‑1 (MQ=255)

                                                        ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg                                     <  2:884006/91‑1 (MQ=255)

                                                        ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg                                     >  2:2208142/1‑91 (MQ=255)

                                                         GCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAgg                                    >  2:1325280‑M1/1‑91 (MQ=255)

                                                         GCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAgg                                    >  2:3030093‑M1/1‑91 (MQ=255)

                                                          aAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                                   >  2:533723‑M1/2‑91 (MQ=255)

                                                          CAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                                   <  2:834795‑M1/91‑1 (MQ=255)

                                                           AAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                                  >  2:2082534‑M1/1‑91 (MQ=255)

                                                           AAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                                  >  1:1787400‑M1/1‑91 (MQ=255)

                                                             AAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCta                                >  1:1407381‑M1/1‑91 (MQ=255)

                                                              AAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGGGTAGGAGTTTTAGGGCtat                               >  2:3465818‑M1/1‑91 (MQ=255)

                                                               AAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt                              >  1:854168‑M1/1‑91 (MQ=255)

                                                               AAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt                              >  1:2444547‑M1/1‑91 (MQ=255)

                                                                agatattaatagtatatacttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatta                             >  2:3467108‑M2/28‑91 (MQ=255)

                                                                AGTATATACTATTAATATCTTTTTTGCTATACTTATAAATACTTAAATAAATAGAAAGACAAAATAAGCAGTAGGAGTTCTAGGGCtatta                             <  2:2954708‑M1/91‑1 (MQ=255)

                                                                 GTATATACTATTAATATCTTTTTTTCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTTGGAGTTTTAGGgctatttt                            <  2:3400870‑M1/91‑3 (MQ=255)

                                                                   atataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAttt                          <  1:2220061/91‑1 (MQ=255)

                                                                    tataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTa                         >  2:2010330/1‑91 (MQ=255)

                                                                    tataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTa                         >  2:3797584/1‑91 (MQ=255)

                                                                      taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAtttgta                       <  2:3542981/91‑4 (MQ=255)

                                                                         tagtatatacttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAaat                    >  2:3205566‑M2/19‑91 (MQ=255)

                                                                           ttAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAaataa                  <  1:2126999/91‑1 (MQ=255)

                                                                            tAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTGTAaataat                 <  1:1695677/91‑1 (MQ=255)

                                                                            tAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAaataat                 <  2:3737775/91‑1 (MQ=255)

                                                                               tatCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatata              >  1:2969691/1‑91 (MQ=255)

                                                                                atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa             <  1:1025070/91‑1 (MQ=255)

                                                                                atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa             >  2:3058410/1‑91 (MQ=255)

                                                                                atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa             >  1:2832635/1‑91 (MQ=255)

                                                                                atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa             >  1:1983059/1‑91 (MQ=255)

                                                                                  cttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGGGTTTTAGGGCTATTATTTACAAAtaatataata           <  2:1620910‑M2/82‑1 (MQ=255)

                                                                                  cttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAAtaatataata           >  1:1848017‑M2/10‑91 (MQ=255)

                                                                                   ttttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATAc          <  2:1499517‑M2/83‑1 (MQ=255)

                                                                                    tttttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACt         <  2:435296‑M2/84‑1 (MQ=255)

                                                                                       ttgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCa      >  2:3417865‑M2/5‑91 (MQ=255)

                                                                                        tgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaa     <  1:1515917‑M2/88‑1 (MQ=255)

                                                                                        tgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaa     >  2:744419‑M2/4‑91 (MQ=255)

                                                                                        tgcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaa     >  1:2242263‑M2/4‑91 (MQ=255)

                                                                                         gcTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCaaa    <  2:2659948‑M2/89‑1 (MQ=255)

                                                                                          cTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAg   >  2:1876767‑M2/2‑91 (MQ=255)

                                                                                           tataATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGa  <  1:69079/91‑1 (MQ=255)

                                                                                           tataATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGa  >  2:234138/1‑91 (MQ=255)

CAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAA‑TTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAATACTGCAAAGA  >  USA300TCH1516_ALE/349664‑349844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.