| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 365040 | 144 (0.760) | 15 (0.090) | 11/136 | NT | 10.7% | intergenic (+50/+55) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter |
| ? | USA300TCH1516_ALE | = 365070 | 128 (0.790) | intergenic (+80/+25) | nupC_1/sglT | Nucleoside permease NupC/Sodium/glucose cotransporter | |||||
Only 100 of 260 total aligned reads displayed.
TAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCC > USA300TCH1516_ALE/364980‑365160 | tAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTa < 2:1285949/91‑1 (MQ=255)tAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTa > 1:2291559/1‑91 (MQ=255)atcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTa > 1:1587878‑M1/50‑91 (MQ=255)atcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTa > 2:1034471‑M1/50‑91 (MQ=255) tcaacatacatttcaaaaacggctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAg > 2:3169179‑M1/49‑91 (MQ=255) gTATTGTAAATGAATCGAAGTACCTAAATTAAATTCACGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgt < 1:972344‑M2/91‑3 (MQ=255) tGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacg > 1:1861661‑M2/1‑85 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 2:2326876‑M2/1‑84 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 2:2706002‑M2/1‑84 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg < 1:1843713‑M2/91‑8 (MQ=255) gTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 2:3691067‑M2/1‑84 (MQ=255) gTAAACGAATCGAAGTACCTAAAGTAAATTCATGGCAAAGCCAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacgg > 2:3576737‑M2/1‑84 (MQ=255) aaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggt < 1:848059‑M2/91‑11 (MQ=255) aaTGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggt > 1:2371388‑M2/1‑81 (MQ=255) tGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTAGGCGCAACAGCGCATCATAACTTAgtgacggggtta < 2:3843144‑M2/91‑13 (MQ=255) aaTCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTa > 1:3335802/1‑91 (MQ=255) aTCGAAGTACCTAAATTAAATTCATGGCAAAGCTATACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTAt < 2:2858775/91‑1 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa > 1:3111379/1‑91 (MQ=255) cGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCa > 2:2435200/1‑91 (MQ=255) gctacgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACa > 2:2643240‑M1/28‑91 (MQ=255) acgaaaaagtagattgttatgataAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATc > 1:1452329‑M1/25‑91 (MQ=255) aaattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTa < 2:1965131/91‑1 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc < 2:1512167/91‑1 (MQ=255) aattaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTAc < 1:881533/91‑1 (MQ=255) attaaattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACt < 1:1610665/91‑1 (MQ=255) ttaaattCATGGCAAAGCTAAACCCCGTCACCAAGCTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACtt > 1:2551345/1‑91 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt > 1:461613/1‑91 (MQ=255) aattCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACttttt > 1:3370712/1‑91 (MQ=255) ttCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCg < 2:2628006/91‑1 (MQ=255) tCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGt > 1:960557/1‑91 (MQ=255) cATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTa > 2:3520318/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg > 2:3755832/1‑91 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAg < 2:2235398/91‑1 (MQ=255) aTGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACCTTTTCGTAg < 1:3161184/91‑1 (MQ=255) ggCAAAGCTGAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGcc < 1:3711017/91‑1 (MQ=255) gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg > 1:3242291/1‑91 (MQ=255) gCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCg < 2:118723/91‑1 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt < 1:119134/91‑1 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGt < 1:3523243/91‑1 (MQ=255) cAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTCAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCgg > 1:3019094/1‑90 (MQ=255) aaGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtgt > 2:2821380/1‑89 (MQ=255) aGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGtttt < 2:2945586/91‑1 (MQ=255) cTAAACCCCGTCCCCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg > 1:2992419/1‑91 (MQ=255) cTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg < 2:3116837/91‑1 (MQ=255) cTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTg < 1:5525/91‑1 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa > 1:2791802/1‑91 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa > 1:2791706/1‑91 (MQ=255) tAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGa < 2:2170051/91‑1 (MQ=255) AAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGaa > 2:475902‑M1/1‑91 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat < 1:628378‑M1/91‑1 (MQ=255) ACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAat < 2:600961‑M1/91‑1 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 2:3237755‑M1/1‑91 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 2:3302318‑M1/1‑91 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg < 2:379819‑M1/91‑1 (MQ=255) CCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatg > 2:2661750‑M1/1‑91 (MQ=255) CCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgta > 2:3637631‑M1/1‑91 (MQ=255) CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat < 2:917779‑M1/91‑1 (MQ=255) CGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtat < 1:3619865‑M1/91‑1 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg > 1:1974776‑M1/1‑91 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg < 1:2825495‑M1/91‑1 (MQ=255) GTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatg < 1:3576327‑M1/91‑1 (MQ=255) TCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAatgtatgt > 2:1263554‑M1/1‑91 (MQ=255) CACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGtt < 2:1555922‑M1/91‑1 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa > 2:2104191‑M1/1‑91 (MQ=255) CCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGa < 1:723806‑M1/91‑1 (MQ=255) cAAGTTGGCGCAACAGCGCATCCTAACTTAGTGACGGGGTTGTATCATAACAATCTACTTTTTCGTAGCCGTTTGTGAAATGTCTGTTGAt > 2:3435963/1‑91 (MQ=255) cAAGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatacta < 1:1122436‑M2/91‑62 (MQ=255) aaGTTGGCGCAACAGCGCATCATAACTTAgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaa < 2:1356291‑M2/91‑63 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg > 2:2882981/1‑91 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 2:417523/91‑1 (MQ=255) aGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATgg < 1:1351546/91‑1 (MQ=255) gTTGGCGCAACAGCGCATCCTAACTCAGTGACGGGGTTTTATCCTAACAATCTACTTTTTCGCAGCCGTTTCCGCAATGTATGTTGATGGt > 2:739092/1‑91 (MQ=255) ttGGCGCAACAGGGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 2:3225368/91‑1 (MQ=255) ttGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGtt < 1:2263673/91‑1 (MQ=255) cgcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGttt > 2:1877560/1‑66 (MQ=255) gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTaata > 1:2459114/1‑88 (MQ=255) gcAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCt > 1:3814650/1‑91 (MQ=255) aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttt < 1:3842400/91‑1 (MQ=255) aaCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTAAAAATGTATGCTGATGGATTATCttt > 2:3364173/1‑91 (MQ=255) aCAGCGCATCATAACTTGgtgacggggtttagctttgccatgaatttaatttaggtacttcgattcatttacaatactaagccaatgattg < 2:2198441‑M2/91‑74 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt > 2:3590587/1‑91 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt < 1:1926136/91‑1 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt < 1:497603/91‑1 (MQ=255) aCAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCtttt < 1:2815819/91‑1 (MQ=255) cAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt < 1:1417097/91‑1 (MQ=255) cAGCGCATCATAACTTAGTGACGGGGTTTTATAATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttttt < 1:3295998/91‑1 (MQ=255) aGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTc < 2:1220941/91‑1 (MQ=255) cgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa > 2:2005690/1‑91 (MQ=255) cgcATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCaa > 2:1122322/1‑91 (MQ=255) cgcATCATAACTTAGTGACGGGGATTTATCATAACAATCTACTTTTTCGTAGCCGTTCATGAAATGTATGTTGATGGTTTCTttttttaca > 1:1718647/1‑88 (MQ=255) atAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTg < 1:120687/91‑1 (MQ=255) aaCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGtt > 1:2951263/1‑91 (MQ=255) aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa > 1:2156335/1‑91 (MQ=255) aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa > 2:1936206/1‑91 (MQ=255) aCTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTa < 2:2554296/91‑1 (MQ=255) cTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCttt > 2:450802/1‑76 (MQ=255) tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc < 1:1016668/91‑1 (MQ=255) tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc < 1:3218784/91‑1 (MQ=255) tAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATc < 2:2564816/91‑1 (MQ=255) aGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATcc > 1:459806/1‑91 (MQ=255) | TAGTATTGTAAATGAATCGAAGTACCTAAATTAAATTCATGGCAAAGCTAAACCCCGTCACCAAGTTGGCGCAACAGCGCATCATAACTTAGTGACGGGGTTTTATCATAACAATCTACTTTTTCGTAGCCGTTTTTGAAATGTATGTTGATGGTTTATCTTTTTCAAAAATTGTTAATCC > USA300TCH1516_ALE/364980‑365160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |