New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1255843197 (1.030)13 (0.080) 11/138 NT 6.8% intergenic (+59/+185) rplS/USA300HOU_RS06250 50S ribosomal protein L19/hypothetical protein
?USA300TCH1516_ALE = 1255864 189 (1.150)intergenic (+80/+164) rplS/USA300HOU_RS06250 50S ribosomal protein L19/hypothetical protein

Only 100 of 251 total aligned reads displayed.

AAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGG  >  USA300TCH1516_ALE/1255774‑1255954
                                                                                          |                                                                                          
aaaTTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGata                                                                                            >  2:2744555/1‑91 (MQ=255)
aaaTTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGata                                                                                            >  1:2071102/1‑91 (MQ=255)
 aaTTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAt                                                                                           <  1:3481738‑M2/91‑2 (MQ=255)
 aaTTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAt                                                                                           <  2:508068‑M2/91‑2 (MQ=255)
     cGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagat                                                                                       >  1:1627222‑M2/1‑86 (MQ=255)
      gTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatg                                                                                      <  2:800721‑M2/91‑7 (MQ=255)
       ttAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatgg                                                                                     >  1:3436265‑M2/1‑84 (MQ=255)
       ttAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatgg                                                                                     >  1:991066‑M2/1‑84 (MQ=255)
        tAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatggc                                                                                    >  2:3432202‑M2/1‑83 (MQ=255)
          aTCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatggctt                                                                                  >  2:3296079‑M2/1‑81 (MQ=255)
            cAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttt                                                                                <  1:874404/91‑1 (MQ=255)
            cAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttt                                                                                >  2:2568838/1‑91 (MQ=255)
            cAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCtttt                                                                                <  2:552259/91‑1 (MQ=255)
             aGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCAC‑TTTATGGAGTGATATAGATGGCtttttt                                                                              <  2:433699/91‑1 (MQ=255)
                aTTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTg                                                                            <  1:2814487/91‑1 (MQ=255)
                 tttAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGc                                                                           <  1:2785150/91‑1 (MQ=255)
                   tAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTgttt                                                                         >  2:3869773/1‑88 (MQ=255)
                   tAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTg                                                                         >  1:2940260/1‑91 (MQ=255)
                   tAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTg                                                                         >  1:2518160/1‑91 (MQ=255)
                    aaaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGt                                                                        <  1:2653707/91‑1 (MQ=255)
                    aaaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGt                                                                        <  2:1173436/91‑1 (MQ=255)
                     aaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGtt                                                                       <  1:3059661/91‑1 (MQ=255)
                     aaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGtt                                                                       <  1:3060828/91‑1 (MQ=255)
                     aaCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGtt                                                                       <  1:3284433/91‑1 (MQ=255)
                      aCAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGttt                                                                      >  2:1002342/1‑91 (MQ=255)
                       cAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTa                                                                     >  1:2635856/1‑91 (MQ=255)
                       cAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTa                                                                     >  2:1964971/1‑91 (MQ=255)
                          aGCTATGTATGATTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatggctttattgtttgagtcgaa                                                                  <  1:2993602‑M2/91‑27 (MQ=255)
                           gCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTa                                                                 <  1:1274302/91‑1 (MQ=255)
                            cTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTaa                                                                <  2:2608816/91‑1 (MQ=255)
                               tgtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGt                                                             >  1:2162619/1‑91 (MQ=255)
                                gtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTa                                                            <  1:3860634/91‑1 (MQ=255)
                                gtatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTa                                                            >  1:1269383/1‑91 (MQ=255)
                                 tttgAGTCGAATTTGACTCATACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaa                                                           >  2:2460988/3‑91 (MQ=39)
                                 tatgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaa                                                           >  2:2419692/1‑91 (MQ=255)
                                  ttgAGTCGAATTTGACTCATACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaaa                                                          >  2:1180225/2‑91 (MQ=255)
                                  atgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTaaa                                                          >  2:3647085/1‑91 (MQ=255)
                                   tgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAg                                                         <  2:1940308/91‑1 (MQ=255)
                                   tgAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAg                                                         <  2:805053/91‑1 (MQ=255)
                                    gAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGt                                                        <  1:100763/91‑1 (MQ=255)
                                      gTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTg                                                      <  1:366358/91‑1 (MQ=255)
                                        cAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGAt                                                    <  2:3263213/91‑1 (MQ=255)
                                        cAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGAt                                                    <  2:2518160/91‑1 (MQ=255)
                                        cAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGAt                                                    <  2:1767351/91‑1 (MQ=255)
                                        cAAATTCGACTCAAACAATAAAGCCACCAAGGTCACCATTACGGAGTGATATAGATGGCTTTTTTTTCTGTTTAGTTTATGTAAAGTTGAt                                                    >  2:2806439/1‑91 (MQ=255)
                                          aaTTTGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAACGTTGATaa                                                  >  2:722115/1‑91 (MQ=255)
                                          aaTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATaa                                                  >  1:1872853/1‑91 (MQ=255)
                                          aaTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATaa                                                  >  2:1366807/1‑91 (MQ=255)
                                           aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTa                                                            >  2:2646622/1‑80 (MQ=255)
                                           aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                                                 <  1:1362565/91‑1 (MQ=255)
                                           aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                                                 <  2:3339272/91‑1 (MQ=255)
                                           aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                                                 >  1:1982424/1‑91 (MQ=255)
                                           aTTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAAt                                                 <  2:1118011/91‑1 (MQ=255)
                                             tCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGt                                               >  1:663694/1‑91 (MQ=255)
                                             tCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGt                                               <  2:2288761/91‑1 (MQ=255)
                                              cGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTa                                              >  1:464791/1‑91 (MQ=255)
                                               gACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTaa                                             >  1:3854873/1‑91 (MQ=255)
                                                aCTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAAt                                            >  1:2296627/1‑91 (MQ=255)
                                                  tCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTg                                          >  2:1308327/1‑91 (MQ=255)
                                                     aaCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATAtagatggctttattgtttgagtcgaatttgactcatacatagctttgtttaaa                                       <  1:763059‑M2/91‑54 (MQ=255)
                                                     aaCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGttt                                       <  2:3384389/91‑1 (MQ=255)
                                                     aaCAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGttt                                       >  2:3101742/1‑91 (MQ=255)
                                                     aaCAATAAAGCCATCTAGGTCACTTGGATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGttt                                       <  2:3359678/91‑1 (MQ=255)
                                                       cAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTAt                                     >  1:2438184/1‑91 (MQ=255)
                                                         aTAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTc                                   >  1:3296530/1‑91 (MQ=255)
                                                         aTAAAGCCATCTAGGTCACTTTTATGGAGTGATATAAATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTc                                   <  2:676887/91‑1 (MQ=255)
                                                          tAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTcc                                  >  2:2085789/1‑91 (MQ=255)
                                                          tAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTcc                                  >  2:1565031/1‑91 (MQ=255)
                                                           aaaGCCATCTAGGTCACTTTTATGGAGTGATAtagatggctttattgtttgagtcgaatttgactcatacatagctttgtttaaatgctga                                 <  1:1428563‑M2/91‑60 (MQ=255)
                                                             aGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtc                               >  2:3491264/1‑91 (MQ=255)
                                                              gCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTtct                              >  1:3562067/1‑91 (MQ=255)
                                                                  tCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGAT‑ATGTAATTGTTTATTCCTTCTCTAtt                         >  2:186888/1‑91 (MQ=255)
                                                                    tAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTc                        <  1:2218164/91‑1 (MQ=255)
                                                                    tAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTc                        <  1:2218380/91‑1 (MQ=255)
                                                                    tAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTc                        <  2:2397709/91‑1 (MQ=255)
                                                                     aGGTCACTTTTATGGAGTGATAtagatggctttattgtttgagtcgaatttgactcatacatagctttgtttaaatgctgattaacgaatt                       <  1:2339664‑M2/91‑70 (MQ=255)
                                                                     aGGTCACTTTTATGGAGTGATAtagatggctttattgtttgagtcgaatttgactcatacatagctttgtttaaatgctgattaacgaatt                       <  2:3071652‑M2/91‑70 (MQ=255)
                                                                      ggTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCAt                      >  2:2360015/1‑91 (MQ=255)
                                                                       gTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATa                     <  1:2382729/91‑1 (MQ=255)
                                                                           cTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACgt                 >  2:1219222/1‑91 (MQ=255)
                                                                              ttATGGAGTGATAtagatggctttattgtttgagtcgaatttgactcatacatagctttgtttaaatgctgattaacgaatttcttggatt              <  2:1831689‑M2/91‑79 (MQ=255)
                                                                              ttATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGtt              >  1:2528557/1‑91 (MQ=255)
                                                                                aTGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTg            >  1:831383/1‑91 (MQ=255)
                                                                                aTGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTg            >  1:1543558/1‑91 (MQ=255)
                                                                                 tGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGc           <  2:1704834/91‑1 (MQ=255)
                                                                                 tGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGc           >  1:1199266/1‑91 (MQ=255)
                                                                                  ggAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCt          <  1:769478/91‑1 (MQ=255)
                                                                                  ggAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCt          <  2:2253542/91‑1 (MQ=255)
                                                                                  ggAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCt          <  2:543325/91‑1 (MQ=255)
                                                                                   gAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTc         >  1:565564/1‑91 (MQ=255)
                                                                                   gAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTc         >  2:3754683/1‑91 (MQ=255)
                                                                                    aGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCa        <  1:1238568/91‑1 (MQ=255)
                                                                                    aGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCa        >  2:3768425/1‑91 (MQ=255)
                                                                                     gTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCaa       >  1:478962/1‑91 (MQ=255)
                                                                                     gTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCaa       >  2:201312/1‑91 (MQ=255)
                                                                                     gTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCaa       >  2:1640486/1‑91 (MQ=255)
                                                                                     gTGATATAGATGGCTTTTTTTGCTGTTTAGTGAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCaa       <  2:1265744/91‑1 (MQ=255)
                                                                                        atatAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATCCATAACGTGTTTGCTCAAAAt    >  1:2144838/1‑91 (MQ=255)
                                                                                          ataGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATgg  <  1:1845947/91‑1 (MQ=255)
                                                                                          ataGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATgg  <  1:1001952/91‑1 (MQ=255)
                                                                                          |                                                                                          
AAATTCGTTAATCAGCATTTAAACAAAGCTATGTATGAGTCAAATTCGACTCAAACAATAAAGCCATCTAGGTCACTTTTATGGAGTGATATAGATGGCTTTTTTTGCTGTTTAGTTAATGTAAAGTTGATAATGTAATTGTTTATTCCTTCTCTATTCATAACGTGTTTGCTCAAAATGG  >  USA300TCH1516_ALE/1255774‑1255954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.